Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJSA_RS03175 Genome accession   NC_017279
Coordinates   599242..599625 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni IA3902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594242..604625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJSA_RS03155 (CJSA_0598) - 594321..596255 (-) 1935 WP_002858479.1 ribonuclease R family protein -
  CJSA_RS03160 (CJSA_0599) ilvC 596374..597396 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  CJSA_RS03165 (CJSA_0600) - 597400..598482 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  CJSA_RS03170 (CJSA_0601) dprA 598472..599245 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  CJSA_RS03175 (CJSA_0602) dprB 599242..599625 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  CJSA_RS03180 (CJSA_0603) - 599654..600493 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJSA_RS03185 (CJSA_0604) msrA 600669..601166 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJSA_RS03190 (CJSA_0605) ppa 601207..601725 (-) 519 WP_002858521.1 inorganic diphosphatase -
  CJSA_RS03195 (CJSA_0606) adk 601735..602313 (-) 579 WP_002858481.1 adenylate kinase -
  CJSA_RS03200 (CJSA_0607) aspS 602310..604061 (-) 1752 WP_014516733.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=36394 CJSA_RS03175 WP_002858579.1 599242..599625(+) (dprB) [Campylobacter jejuni subsp. jejuni IA3902]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=36394 CJSA_RS03175 WP_002858579.1 599242..599625(+) (dprB) [Campylobacter jejuni subsp. jejuni IA3902]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment