Detailed information NTG0363611

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FEZ16_RS20945
• Genome accession: NZ_CP040351
• Coordinates: 4317883..4318683 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain P39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4312883..4323683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEZ16_RS20910 (FEZ16_21055)	gspH	4313039..4313554 (+)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-
FEZ16_RS20915 (FEZ16_21060)	gspI	4313551..4313916 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FEZ16_RS20920 (FEZ16_21065)	gspJ	4313913..4314509 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
FEZ16_RS20925 (FEZ16_21070)	gspK	4314506..4315492 (+)	987	WP_077254427.1	type II secretion system minor pseudopilin GspK	-
FEZ16_RS20930 (FEZ16_21075)	gspL	4315479..4316672 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
FEZ16_RS20935 (FEZ16_21080)	-	4316665..4317150 (+)	486	WP_023312675.1	type II secretion system protein M	-
FEZ16_RS20940 (FEZ16_21085)	-	4317140..4317886 (+)	747	WP_087791831.1	type II secretion system protein N	-
FEZ16_RS20945 (FEZ16_21090)	pilD	4317883..4318683 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
FEZ16_RS20950 (FEZ16_21095)	hrpB	4318731..4321160 (-)	2430	WP_064153122.1	ATP-dependent helicase HrpB	-
FEZ16_RS20955 (FEZ16_21100)	thpR	4321233..4321769 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
FEZ16_RS20960 (FEZ16_21105)	sfsA	4321769..4322485 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FEZ16_RS20965 (FEZ16_21110)	dksA	4322648..4323103 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=363611 FEZ16_RS20945 WP_004145898.1 4317883..4318683(+) (pilD) [Klebsiella pneumoniae strain P39]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=363611 FEZ16_RS20945 WP_004145898.1 4317883..4318683(+) (pilD) [Klebsiella pneumoniae strain P39]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425