Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3T17_RS13455 Genome accession   NZ_CP047805
Coordinates   2740224..2740619 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1654     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2735224..2745619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T17_RS13425 (E3T17_13425) - 2736167..2736571 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  E3T17_RS13435 (E3T17_13435) - 2737450..2737683 (+) 234 WP_000384523.1 DUF1146 family protein -
  E3T17_RS13440 (E3T17_13440) murA 2737794..2739059 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E3T17_RS13445 (E3T17_13445) fabZ 2739093..2739533 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E3T17_RS13450 (E3T17_13450) - 2739590..2740030 (-) 441 WP_000846746.1 YwpF-like family protein -
  E3T17_RS13455 (E3T17_13455) ssb 2740224..2740619 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  E3T17_RS13460 (E3T17_13460) sceD 2741008..2741703 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  E3T17_RS13465 (E3T17_13465) tenA 2742228..2742917 (+) 690 WP_000396068.1 thiaminase II -
  E3T17_RS13470 (E3T17_13470) thiD 2742910..2743740 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E3T17_RS13475 (E3T17_13475) thiM 2743724..2744515 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  E3T17_RS13480 (E3T17_13480) thiE 2744517..2745158 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=363587 E3T17_RS13455 WP_000932696.1 2740224..2740619(+) (ssb) [Staphylococcus aureus strain UP_1654]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=363587 E3T17_RS13455 WP_000932696.1 2740224..2740619(+) (ssb) [Staphylococcus aureus strain UP_1654]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985