Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FE254_RS08755 Genome accession   NZ_CP040349
Coordinates   1914267..1914899 (+) Length   210 a.a.
NCBI ID   WP_013714801.1    Uniprot ID   A0A1H0K8K5
Organism   Pseudomonas guguanensis strain HMFL31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1909267..1919899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE254_RS08740 (FE254_08790) - 1909773..1911017 (+) 1245 WP_273254860.1 lipoprotein-releasing ABC transporter permease subunit -
  FE254_RS08745 (FE254_08795) - 1911055..1911582 (-) 528 WP_024307564.1 DUF2062 domain-containing protein -
  FE254_RS08750 (FE254_08800) comA 1911717..1913930 (+) 2214 WP_273254908.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FE254_RS08755 (FE254_08810) exbB 1914267..1914899 (+) 633 WP_013714801.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FE254_RS08760 (FE254_08815) - 1914896..1915324 (+) 429 WP_090426166.1 biopolymer transporter ExbD -
  FE254_RS08765 (FE254_08820) lpxK 1915325..1916326 (+) 1002 WP_273254861.1 tetraacyldisaccharide 4'-kinase -
  FE254_RS08770 (FE254_08825) - 1916349..1916534 (+) 186 WP_013714804.1 Trm112 family protein -
  FE254_RS08775 (FE254_08830) kdsB 1916535..1917299 (+) 765 WP_273254862.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FE254_RS08780 (FE254_08835) - 1917299..1917763 (+) 465 WP_273254863.1 low molecular weight protein-tyrosine-phosphatase -
  FE254_RS08785 (FE254_08840) murB 1917760..1918779 (+) 1020 WP_273254864.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22855.10 Da        Isoelectric Point: 7.8833

>NTDB_id=363553 FE254_RS08755 WP_013714801.1 1914267..1914899(+) (exbB) [Pseudomonas guguanensis strain HMFL31]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREDSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPMLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=363553 FE254_RS08755 WP_013714801.1 1914267..1914899(+) (exbB) [Pseudomonas guguanensis strain HMFL31]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGCATCGTCGC
CGAGCGCCTCTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAACCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAATCAGAAGCTCAAGGAGCTGCGCGAGGATTCGCCGCTGGGGCAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCGCGCGTCATCCATGATTTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGGCATCGCGCCGCTGCTCGGTCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCTCTGATCACCACCGCGGCC
GGCCTGATGGTGGCGATCCCTGCGCTGTTCTTCCATCGTTACCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCATGGA
ACAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGTGATCGCGACGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0K8K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9

Multiple sequence alignment