Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   E3T17_RS01770 Genome accession   NZ_CP047805
Coordinates   332425..333687 (+) Length   420 a.a.
NCBI ID   WP_000472293.1    Uniprot ID   Q6GG31
Organism   Staphylococcus aureus strain UP_1654     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 327425..338687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T17_RS01735 (E3T17_01735) infC 327953..328480 (+) 528 WP_001791219.1 translation initiation factor IF-3 -
  E3T17_RS01740 (E3T17_01740) rpmI 328509..328709 (+) 201 WP_001125540.1 50S ribosomal protein L35 -
  E3T17_RS01745 (E3T17_01745) rplT 328756..329112 (+) 357 WP_001138360.1 50S ribosomal protein L20 -
  E3T17_RS01750 (E3T17_01750) - 329254..329862 (+) 609 WP_000032653.1 NUDIX domain-containing protein -
  E3T17_RS01755 (E3T17_01755) - 329881..330810 (+) 930 WP_001280014.1 hypothetical protein -
  E3T17_RS01760 (E3T17_01760) - 330815..330925 (+) 111 WP_001790560.1 hypothetical protein -
  E3T17_RS01765 (E3T17_01765) tig 330973..332274 (+) 1302 WP_000127572.1 trigger factor -
  E3T17_RS01770 (E3T17_01770) clpX 332425..333687 (+) 1263 WP_000472293.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E3T17_RS01775 (E3T17_01775) yihA 333841..334431 (+) 591 WP_000867694.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  E3T17_RS01780 (E3T17_01780) hemA 334648..335994 (+) 1347 WP_000545456.1 glutamyl-tRNA reductase -
  E3T17_RS01785 (E3T17_01785) ccsA 336016..336831 (+) 816 WP_001157326.1 cytochrome c biogenesis protein -
  E3T17_RS01790 (E3T17_01790) hemC 336873..337799 (+) 927 WP_001230225.1 hydroxymethylbilane synthase -
  E3T17_RS01795 (E3T17_01795) - 337821..338489 (+) 669 WP_000805946.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46279.44 Da        Isoelectric Point: 4.2645

>NTDB_id=363512 E3T17_RS01770 WP_000472293.1 332425..333687(+) (clpX) [Staphylococcus aureus strain UP_1654]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=363512 E3T17_RS01770 WP_000472293.1 332425..333687(+) (clpX) [Staphylococcus aureus strain UP_1654]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
GTTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTAGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAATTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531