Detailed information NTG0363511

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: EQO03_RS09080
• Genome accession: NZ_CP040344
• Coordinates: 1729157..1730533 (+)
• Length: 458 a.a.
• NCBI ID: WP_157409255.1
• Uniprot ID: -
• Organism: Bacillus albus strain DLOU-Yingkou
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1724157..1735533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQO03_RS09060	ctsR	1724350..1724811 (+)	462	WP_048526354.1	transcriptional regulator CtsR	-
EQO03_RS09065	-	1724985..1725533 (+)	549	WP_048526355.1	UvrB/UvrC motif-containing protein	-
EQO03_RS09070	-	1725538..1726602 (+)	1065	WP_048526356.1	protein arginine kinase	-
EQO03_RS09075	clpC	1726625..1729060 (+)	2436	WP_000971179.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
EQO03_RS09080	radA	1729157..1730533 (+)	1377	WP_157409255.1	DNA repair protein RadA	Machinery gene
EQO03_RS09085	disA	1730537..1731610 (+)	1074	WP_048526357.1	DNA integrity scanning diadenylate cyclase DisA	-
EQO03_RS09090	-	1731771..1732880 (+)	1110	WP_048526358.1	PIN/TRAM domain-containing protein	-
EQO03_RS09095	ispD	1732897..1733577 (+)	681	WP_071757382.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EQO03_RS09100	ispF	1733693..1734169 (+)	477	WP_048526360.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49812.42 Da
• Isoelectric Point: 7.1421

>NTDB_id=363511 EQO03_RS09080 WP_157409255.1 1729157..1730533(+) (radA) [Bacillus albus strain DLOU-Yingkou]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIA
AHIEEVNPVFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPADAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide

• Length: 1377 bp

>NTDB_id=363511 EQO03_RS09080 WP_157409255.1 1729157..1730533(+) (radA) [Bacillus albus strain DLOU-Yingkou]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGGTATCAGTCACCAAAATATATGGGGAAATGCCCTGGGTG
TGGTCAATGGAATACGCTTGTTGAAGAGATGGAACCAGTTGTATCATCAAGGCGCCTTAATTATGCCAATGCGATTCAAT
CAGAAGTAACAAAACCAAGACGTCTAACAGAAGTAGAAACAAAGTCTGAGGCGCGTATTGAAACGAAATTTCAAGAATTT
AACCGCGTACTTGGTGGCGGGATTGTAGATGGGTCCTTAGTACTTATTGGTGGTGACCCTGGGATTGGAAAATCAACGTT
ACTATTACAAATATCATCGCAATTAGCAGATTCTTCATATGATGTACTATATATATCGGGTGAAGAATCAGCAAAACAGA
TTAAACTGCGTGCGGACCGTTTACATGTAAATGGTAGCAATCTATTTGTTGTATCAGAGACGGATTTGCAGCGGATTGCA
GCACACATTGAAGAAGTGAATCCAGTCTTTGTTGTTATTGATTCTATCCAAACGATACATTTACCTGAGGTAACGTCAGC
ACCAGGAAGTGTGGCGCAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGGATCCCTATTTTTA
TCGTTGGACATGTGACAAAAGAGGGGGCAATTGCAGGGCCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTATTTT
GAAGGAGACCGCCATCATACATATCGTATTTTGCGAGCGGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAACTTGGCCTTGCGGAAGTATTAAATCCTTCTGAAATTTTCCTTGAGGAAAGACCAGTTGGGGTTGCAG
GGTCAACGGTGGTTGCCTCAATGGAAGGAACACGACCAGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCAACGGGAATTGACCATAACCGTGTATCGCTTATTATGGCAGTGTTAGAAAAAAGAACAGG
TTTATTATTGCAAAACCAAGACGCATATTTAAAAGTAGCAGGTGGTCTGAAGTTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATAGCTTCAAGTTTTAGAGATAAATCTACGGCACCAGCCGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTGTCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGCGCTATTATTCC
TAGAAAAAATTTAGGGGGATGGACAATTCCTGATGGGATTGAAGTAGTAGGTGTATCCAATTTAGGAGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (60-222)

• Subunit ChlI of Mg-chelatase (ChlI) (363-430)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	74.946	100	0.751
radA	Streptococcus pneumoniae Rx1	63.797	98.908	0.631
radA	Streptococcus pneumoniae D39	63.797	98.908	0.631
radA	Streptococcus pneumoniae R6	63.797	98.908	0.631
radA	Streptococcus pneumoniae TIGR4	63.797	98.908	0.631
radA	Streptococcus mitis SK321	63.797	98.908	0.631
radA	Streptococcus mitis NCTC 12261	63.576	98.908	0.629