Detailed information NTG0363364

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: EUC40_RS20000
• Genome accession: NZ_CP040336
• Coordinates: 3940662..3943262 (-)
• Length: 866 a.a.
• NCBI ID: WP_156576366.1
• Uniprot ID: -
• Organism: Bacillus luti strain FJ
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3935662..3948262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EUC40_RS19970	fabF	3935976..3937214 (-)	1239	WP_156576364.1	beta-ketoacyl-ACP synthase II	-
EUC40_RS19975	fabH	3937246..3938178 (-)	933	WP_001100546.1	beta-ketoacyl-ACP synthase III	-
EUC40_RS19980	comZ	3938418..3938594 (-)	177	WP_001003337.1	ComZ family protein	Regulator
EUC40_RS19985	-	3938649..3939521 (-)	873	WP_156576365.1	NAD(P)-dependent oxidoreductase	-
EUC40_RS19990	-	3939551..3940285 (-)	735	WP_071711080.1	alpha/beta hydrolase	-
EUC40_RS19995	-	3940442..3940624 (+)	183	WP_001211116.1	YjzD family protein	-
EUC40_RS20000	clpC	3940662..3943262 (-)	2601	WP_156576366.1	ATP-dependent chaperone ClpB	Regulator
EUC40_RS20005	-	3943473..3943652 (-)	180	WP_000531421.1	YjzC family protein	-
EUC40_RS20010	-	3944147..3944956 (+)	810	WP_001041234.1	Cof-type HAD-IIB family hydrolase	-
EUC40_RS20015	-	3945062..3945202 (+)	141	WP_000516818.1	hypothetical protein	-
EUC40_RS20020	-	3945203..3945400 (+)	198	WP_071711082.1	DUF3813 domain-containing protein	-
EUC40_RS20025	-	3945426..3946283 (-)	858	WP_071711083.1	YitT family protein	-
EUC40_RS20030	-	3946384..3946515 (+)	132	WP_156576367.1	DUF3941 domain-containing protein	-
EUC40_RS20035	prsA	3946644..3947501 (+)	858	WP_071711084.1	peptidylprolyl isomerase PrsA	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97486.50 Da
• Isoelectric Point: 5.1584

>NTDB_id=363364 EUC40_RS20000 WP_156576366.1 3940662..3943262(-) (clpC) [Bacillus luti strain FJ]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGIESLIKKKPSVTGSGAE
AGKLYITSTLQQLLVRAEKEAEKLQDDYISVEHVLLAFAEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTANEIKGIVDKIVKELQGRLADRHIT
VELTDSAKGFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=363364 EUC40_RS20000 WP_156576366.1 3940662..3943262(-) (clpC) [Bacillus luti strain FJ]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAGGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGAATAGAAAGCTTAATTAAAAAGAAACCTTCTGTAACGGGAAGCGGAGCAGAA
GCTGGGAAATTGTATATAACAAGCACTCTGCAACAACTGCTTGTAAGAGCGGAGAAGGAAGCAGAAAAACTGCAAGATGA
TTACATTTCAGTCGAACATGTATTGCTTGCTTTTGCTGAAGAAAAAGGCGATATCAATCAATTATTTACAAGATTTCATA
TTACGAAAGATAATTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAGGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTAAGAGCGGGGAAAATTGATCCTGTAATCGGCCGGGA
TAGTGAAATTCGCCGTGTTATCCGCATTCTTTCACGTAAAACGAAAAACAATCCTGTTTTAATTGGTGAACCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGGTTAGCGCAGCGTATTGTGAAAAAGGATGTACCAGAAGGATTAAAAGATAGAACGATT
TTTGCATTAGATATGAGCGCGCTCGTAGCTGGTGCGAAATTCCGTGGTGAGTTTGAAGAGCGTCTGCAAGCTGTATTGAA
TGAAATTAAAAAGAGTGAAGGGCGCATTTTACTATTCATCGATGAACTTCATACAATCGTTGGCGCTGGTAAAACAGAAG
GAGCGATGGATGCAGGGAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCAACGACGCTCGAT
GAATATCGTAAATATATTGAGAAAGATCCAGCTCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACCATTTCAATTTTACGTGGATTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCCGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCAGATAAAGCGATTGACCTTGTTGATGAAGCG
TGCGCAACAATTCGTACGGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGTTAGAAAT
TGAGGAAGCAGCTCTTGGAAAAGAAACAGACCGTGGTAGCCAAGAACGTCTAAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGCATGAGAGCGAAATGGGAGAAGGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGCGAA
CATTTAGAGCGCCTGCGCCGAGAGTTAGAAGAAGCAGAAGGGAATTACGATTTAAATAAAGCAGCTGAACTTCGTCACGG
GAAAATTCCTGCGATTGAAAAAGAGTTGAAAGAAGCAGAAGAAATGGGCGCACATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCAGATATTGTTTCACGCTGGACGGGTATTCCTGTCGCAAAACTTGTTGAAGGT
GAACGTGAGAAATTATTACGCCTAGAGCAAATTTTATCAGAGCGTGTCATCGGACAAGAAGAAGCGGTAAGCCTAGTATC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGTCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCGAAAACGTTAGCACAGTCTTTATTTGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCCGAGTACATGGAGAAACATGCCGTGTCCCGCTTAATTGGTGCACCTCCTGGATATGTAGGATATGAAGAAGGTGGTCA
ATTAACAGAAGCAGTAAGACGTAAACCATATTCCGTTATTTTGTTAGATGAAATTGAAAAAGCACATCCAGAAGTATTTA
ACATTTTATTACAAATGTTAGACGATGGCCGCATTACAGATTCACAGGGCCGTACAGTAGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCACTTATTAGAAGGTTTAGAAGAAGATGGTTCGATTAAAGAAGAATCAAGAGA
GCTTGTAATGGGACAATTAAGAGGACATTTCCGACCAGAATTTTTAAACCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAGCGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCACATTACA
GTAGAATTAACAGATTCCGCGAAAGGATTCGTTGTAGAAGCTGGATTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATATGTACAACGTCAAGTGGAAACGAAACTAGCACGAGAATTAATTGCAGGAACGATTACTGACAATAGTCACGTAGTTG
TTGATGTTGAAAATAACGAGTTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (345-447)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.543	100	0.48
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.268	100	0.426
clpC	Lactococcus lactis subsp. cremoris KW2	47.059	82.448	0.388