Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EUC40_RS19880 Genome accession   NZ_CP040336
Coordinates   3914557..3916383 (-) Length   608 a.a.
NCBI ID   WP_071711069.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3909557..3921383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS19845 - 3909973..3910770 (-) 798 WP_000673190.1 NAD kinase -
  EUC40_RS19850 - 3910789..3911427 (-) 639 WP_071711066.1 GTP pyrophosphokinase family protein -
  EUC40_RS19855 - 3911458..3911829 (-) 372 WP_001180011.1 hypothetical protein -
  EUC40_RS19860 - 3911974..3912552 (+) 579 WP_071711067.1 CYTH domain-containing protein -
  EUC40_RS19865 - 3912734..3913132 (+) 399 WP_000043382.1 hypothetical protein -
  EUC40_RS19870 - 3913132..3914025 (+) 894 WP_000360661.1 ClpXP adapter SpxH family protein -
  EUC40_RS19880 pepF 3914557..3916383 (-) 1827 WP_071711069.1 oligoendopeptidase F Regulator
  EUC40_RS19885 - 3916435..3917679 (-) 1245 WP_156576360.1 competence protein CoiA family protein -
  EUC40_RS19890 - 3917759..3919303 (-) 1545 WP_071711071.1 cardiolipin synthase -
  EUC40_RS19895 mecA 3919376..3920059 (-) 684 WP_000402129.1 adaptor protein MecA Regulator
  EUC40_RS19900 - 3920418..3921092 (+) 675 WP_156576361.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70371.71 Da        Isoelectric Point: 4.6480

>NTDB_id=363359 EUC40_RS19880 WP_071711069.1 3914557..3916383(-) (pepF) [Bacillus luti strain FJ]
MSEQNKAKTLPDRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILTISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKFKNTFSST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQNLLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKRAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=363359 EUC40_RS19880 WP_071711069.1 3914557..3916383(-) (pepF) [Bacillus luti strain FJ]
ATGTCTGAACAAAACAAAGCAAAAACATTACCAGATCGCAATGAGATTGAAGAAGCAAATACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAGGAATTCCAAGCTATTAAAGAGTTATTACCGAAGTTAACTGAATTTAAAGGTA
AGCTTGGTGACTCTGCGGACAACTTACTTGAGGCACTGCAATATGAAGATGAGATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCTCATATGCGTTACGATCAAGATACGACAAACTCTGTATATCAAGCATTAAATGATCGTGCGACAAATTTATA
CTCACAAGTATCTAGTAGTACAGCTTATATCGTGCCTGAAATTTTAACGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAAGCTTTACTAGCGGAAGCGTCTGAAGTGATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
AAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAATAGAAATTACGCATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTCCGTGAAGATGCATTCAAAGCTGTTTATGAAACGTACGGGAAATTTAAGAACACATTCTCAAGTACG
TTAAGCGGTGCAGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATATGATTCTGCTCGCCAAGCTGCATTAAGTAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACAGTAAATGACAACTTACATCTATTACATCGTTACATTG
ATATTCGTAAACGAGCATTAGGACTTGATGAGCTCCATATGTACGATTTATATACACCGCTCGTACCAGAAGTGAAAATG
AACGTGAAATATGAAGAAGCGCAAAACCTGTTATTAAAATCTTTAAACGTACTTGGTGATGAGTATGTTGAAATTTTGAA
AGAAGCATATGAAAATCGTTGGGTAGATGTGTACGAGAATAAAGGAAAGCGAAGCGGAGCATATTCATCTGGTGCATACG
GGACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAGACACAGCCGCACGTATATGGGGATTATTCAATCTTCGTTGCAGAGGTAGCATCAAC
TTGTAATGAAGCACTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ACTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGACATGTTAACGGAAATCTACTACGATTTAAATAAGAAATACTTCGGTGACGCGTTAGT
AATCGATGAAGAAATTGGCTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCGGCAACAGCTTTATCGAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAACGAGTTC
TTAAAGGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAGAGCAGGAGTAGATATGGCGTCTCCAGAACCTGTAAA
AGAAGCACTACAAGTATTCGAAGAAAAATTAAATGAATTAGAAGCGTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

97.533

0.485

Multiple sequence alignment