Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EUC39_RS25640 Genome accession   NZ_CP040334
Coordinates   5134053..5135879 (-) Length   608 a.a.
NCBI ID   WP_157418227.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 5129053..5140879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS25610 - 5129480..5130277 (-) 798 WP_106822770.1 NAD kinase -
  EUC39_RS25615 - 5130296..5130934 (-) 639 WP_088349930.1 GTP pyrophosphokinase family protein -
  EUC39_RS25620 - 5130965..5131336 (-) 372 WP_001180005.1 hypothetical protein -
  EUC39_RS25625 - 5131481..5132059 (+) 579 WP_106822772.1 CYTH domain-containing protein -
  EUC39_RS25630 - 5132228..5132626 (+) 399 WP_000043386.1 hypothetical protein -
  EUC39_RS25635 - 5132626..5133519 (+) 894 WP_053565015.1 ClpXP adapter SpxH family protein -
  EUC39_RS27420 - 5133749..5133922 (+) 174 WP_081366397.1 hypothetical protein -
  EUC39_RS25640 pepF 5134053..5135879 (-) 1827 WP_157418227.1 oligoendopeptidase F Regulator
  EUC39_RS25645 - 5135930..5137174 (-) 1245 WP_157418228.1 competence protein CoiA -
  EUC39_RS25650 - 5137255..5138799 (-) 1545 WP_000799191.1 cardiolipin synthase -
  EUC39_RS25655 mecA 5138872..5139555 (-) 684 WP_000350715.1 adaptor protein MecA Regulator
  EUC39_RS25660 - 5139901..5140575 (+) 675 WP_000362612.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70232.57 Da        Isoelectric Point: 4.6009

>NTDB_id=363320 EUC39_RS25640 WP_157418227.1 5134053..5135879(-) (pepF) [Bacillus cereus strain DLOU-Changhai]
MSEQNKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTMQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDPRVREDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNENLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=363320 EUC39_RS25640 WP_157418227.1 5134053..5135879(-) (pepF) [Bacillus cereus strain DLOU-Changhai]
ATGTCTGAACAAAACAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAGGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACAATGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAAGCT
GAGGAGGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCCTCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGGAAATTTAAAAATACATTCGCAAGTACG
TTAAGTGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACGGTAAATGAAAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTTAAAATG
AATGTGAAATACGAAGAAGCACAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATACTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAACTTATTTACACTTGCTCATGAGTTTGGCCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCAAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGCTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

97.533

0.485

Multiple sequence alignment