Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SMI_RS07900 Genome accession   NC_013853
Coordinates   1602630..1603862 (-) Length   410 a.a.
NCBI ID   WP_012972566.1    Uniprot ID   A0A387B487
Organism   Streptococcus mitis B6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597630..1608862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS07875 (smi_1554) whiA 1598819..1599730 (-) 912 WP_000011281.1 DNA-binding protein WhiA -
  SMI_RS07880 (smi_1555) - 1599727..1600704 (-) 978 WP_001231096.1 YvcK family protein -
  SMI_RS07885 (smi_1556) rapZ 1600701..1601591 (-) 891 WP_000163060.1 RNase adapter RapZ -
  SMI_RS07890 (smi_1557) - 1601643..1602023 (-) 381 WP_001140422.1 RidA family protein -
  SMI_RS07895 (smi_1558) yihA 1602034..1602621 (-) 588 WP_000422594.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SMI_RS07900 (smi_1559) clpX 1602630..1603862 (-) 1233 WP_012972566.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SMI_RS10585 (smi_1560) - 1603899..1604069 (-) 171 WP_000442260.1 hypothetical protein -
  SMI_RS07905 (smi_1561) - 1604069..1604575 (-) 507 WP_000162455.1 dihydrofolate reductase -
  SMI_RS07910 (smi_1562) - 1604707..1605225 (-) 519 WP_033689158.1 Dps family protein -
  SMI_RS07915 (smi_1563) lytC 1605458..1607068 (-) 1611 WP_012972567.1 choline binding-anchored murein hydrolase LytC -
  SMI_RS07920 (smi_1564) tpiA 1607102..1607860 (-) 759 WP_000087894.1 triose-phosphate isomerase -
  SMI_RS07925 (smi_1565) - 1607958..1608635 (-) 678 WP_000221586.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45681.16 Da        Isoelectric Point: 4.4240

>NTDB_id=36328 SMI_RS07900 WP_012972566.1 1602630..1603862(-) (clpX) [Streptococcus mitis B6]
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=36328 SMI_RS07900 WP_012972566.1 1602630..1603862(-) (clpX) [Streptococcus mitis B6]
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAGGAAGAAGTACAAAAAATAAT
CGCAGGTAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAGGAAATCATTCGTGAGGAGTTGGCGGAAGAAG
TCTTGGCAGATTTGTCTGAGGTACCAAAACCAATCGAACTTCTCCATATCTTGAATCACTATGTAATCGGTCAAGATCGT
GCCAAACGTGCTTTAGCAGTAGCGGTTTACAATCACTACAAACGTATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACATTCCTTGCCCAGACCTTGGCTA
AGAGTTTGAATGTGCCTTTTGCGATCGCAGATGCGACAGCTCTGACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATTCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATTGAACGTGCAGAGCGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAACGTCTCTATCACACGTGATGTTTCTGGTGAAGGAGTGCAACAAGCTCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGTAAGCATCCACAACAAGAGATGATTCAAGTGGATACC
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATCGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAAGCGATTGACGAAAACAGCTCTTACATGCAGGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCTGCTCTTGAACAGTTGACAGTAGATGATTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCTTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCTCTTCAAGAGATTGCCAATAAGGCTATTGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGACGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCTTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387B487

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment