Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   THTHE16_RS10010 Genome accession   NC_017272
Coordinates   1859114..1859923 (-) Length   269 a.a.
NCBI ID   WP_014510984.1    Uniprot ID   -
Organism   Thermus thermophilus SG0.5JP17-16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854114..1864923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS09980 (Ththe16_1961) rsmI 1854275..1855069 (-) 795 WP_041444954.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  THTHE16_RS09985 (Ththe16_1962) - 1855071..1855565 (-) 495 WP_014510981.1 hypothetical protein -
  THTHE16_RS09990 (Ththe16_1963) - 1855629..1856156 (-) 528 WP_011173971.1 inorganic diphosphatase -
  THTHE16_RS09995 (Ththe16_1964) - 1856189..1856815 (+) 627 WP_014510982.1 YcxB family protein -
  THTHE16_RS10000 (Ththe16_1965) comEA 1856788..1857096 (+) 309 WP_024119555.1 ComEA family DNA-binding protein Machinery gene
  THTHE16_RS10005 (Ththe16_1966) comA/comEC 1857093..1859126 (+) 2034 WP_014510983.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  THTHE16_RS10010 (Ththe16_1967) spo0J 1859114..1859923 (-) 810 WP_014510984.1 ParB/RepB/Spo0J family partition protein Regulator
  THTHE16_RS10015 (Ththe16_1968) soj 1859907..1860656 (-) 750 WP_014510985.1 chromosome-partitioning ATPase Soj -
  THTHE16_RS10020 (Ththe16_1969) rsmG 1860650..1861399 (-) 750 WP_014510986.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  THTHE16_RS10025 (Ththe16_1970) mnmG 1861399..1863192 (-) 1794 WP_014510987.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29786.69 Da        Isoelectric Point: 10.1293

>NTDB_id=36328 THTHE16_RS10010 WP_014510984.1 1859114..1859923(-) (spo0J) [Thermus thermophilus SG0.5JP17-16]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRPPEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=36328 THTHE16_RS10010 WP_014510984.1 1859114..1859923(-) (spo0J) [Thermus thermophilus SG0.5JP17-16]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTTGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAACGGGAGGACCTCTCTCCTGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTTCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTTAGGGAGCGCCTGG
CCATGGCCCCCAAGCGCCCCCCCGAGCCCTCCCCCCTCTCCCTGGAACTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42

92.937

0.39

Multiple sequence alignment