Detailed information NTG0363252

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TCK1_RS03185
• Genome accession: NZ_CP040324
• Coordinates: 694235..695101 (-)
• Length: 288 a.a.
• NCBI ID: WP_159265860.1
• Uniprot ID: A0AAE6R8U3
• Organism: Pseudomonas monteilii strain TCU-CK1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 689235..700101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TCK1_RS03150 (TCK1_613)	-	689765..691060 (-)	1296	WP_027609788.1	NAD(P)/FAD-dependent oxidoreductase	-
TCK1_RS03155 (TCK1_614)	-	691145..691318 (-)	174	WP_013970765.1	DUF3094 family protein	-
TCK1_RS03160 (TCK1_615)	-	691451..692080 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
TCK1_RS03165 (TCK1_616)	-	692136..692567 (-)	432	WP_025754726.1	hypothetical protein	-
TCK1_RS03170 (TCK1_617)	-	692654..693361 (+)	708	WP_159265859.1	energy-coupling factor ABC transporter permease	-
TCK1_RS03175 (TCK1_618)	yacG	693415..693615 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
TCK1_RS03180 (TCK1_619)	coaE	693612..694235 (-)	624	WP_084297447.1	dephospho-CoA kinase	-
TCK1_RS03185 (TCK1_620)	pilD	694235..695101 (-)	867	WP_159265860.1	prepilin peptidase	Machinery gene
TCK1_RS03190 (TCK1_621)	-	695104..696312 (-)	1209	WP_159265861.1	type II secretion system F family protein	-
TCK1_RS03195 (TCK1_622)	-	696529..696939 (+)	411	WP_019097784.1	pilin	-
TCK1_RS03205	-	697248..698021 (+)	774	Protein_614	tyrosine-type recombinase/integrase	-
TCK1_RS03210 (TCK1_624)	-	698035..698607 (+)	573	WP_159265862.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31999.26 Da
• Isoelectric Point: 8.1521

>NTDB_id=363252 TCK1_RS03185 WP_159265860.1 694235..695101(-) (pilD) [Pseudomonas monteilii strain TCU-CK1]
MTLWTLLAEQPAYFFTLATLLGLLVGSFLNVLVFRLPIMLERQWQREAQEVLGLPVTQHKRFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSACKTRISPRYPMVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAISGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=363252 TCK1_RS03185 WP_159265860.1 694235..695101(-) (pilD) [Pseudomonas monteilii strain TCU-CK1]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCTTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGTGTTTCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TGCCGGTTACGCAGCACAAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTTATCAGTTACCTGGCATTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGATGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCTTTCAACCTGTACGCCCCGCTAACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGTTGTTGCTGTCATCGGTGGTGGGTGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTTC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	51.504	92.361	0.476
pilD	Acinetobacter nosocomialis M2	50.752	92.361	0.469
pilD	Vibrio campbellii strain DS40M4	47.482	96.528	0.458
pilD	Neisseria gonorrhoeae MS11	48.864	91.667	0.448