Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SMI_RS04950 Genome accession   NC_013853
Coordinates   936020..937822 (+) Length   600 a.a.
NCBI ID   WP_000244106.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 931020..942822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS04940 (smi_0979) - 931116..934772 (+) 3657 WP_000468780.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  SMI_RS04945 (smi_0980) coiA 935048..936001 (+) 954 WP_000495918.1 competence protein CoiA Machinery gene
  SMI_RS04950 (smi_0981) pepF 936020..937822 (+) 1803 WP_000244106.1 oligoendopeptidase F Regulator
  SMI_RS04955 (smi_0982) - 937824..938537 (+) 714 WP_012972506.1 O-methyltransferase -
  SMI_RS04960 (smi_0983) prsA 938604..939542 (+) 939 WP_000727942.1 peptidylprolyl isomerase PrsA -
  SMI_RS04965 (smi_0984) ftsW 939703..940926 (+) 1224 WP_000703373.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 70019.94 Da        Isoelectric Point: 4.4954

>NTDB_id=36318 SMI_RS04950 WP_000244106.1 936020..937822(+) (pepF) [Streptococcus mitis B6]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKELTEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEEQYADFLEAQPKLQLYQHYFDKLLQGKEHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPFVKDEDGNEVQLSHGVYMRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALADNFVPESVYDNLVVAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=36318 SMI_RS04950 WP_000244106.1 936020..937822(+) (pepF) [Streptococcus mitis B6]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATTTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGAGTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCTTGGATAGTGCGGATAGCC
TACTCGAAATTACTGAATTTTCTCTTGAGATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAAAATGAC
CAGGACACTCGTGAAGCCAAGTATCAAGAGTACTACGCTAAGGCAATGACACTTTACAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAAATCAGTGAAGAGCAGTATGCTGACTTTTTAGAAGCTCAACCAAAATTGCAGCTTT
ATCAACACTATTTTGACAAGCTTTTACAAGGCAAGGAACACGTTCTATCACAACGAGAAGAAGAATTATTAGCTGGAGCT
GGTGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATTTTAGATAATGCAGATATCGTCTTTCCATTTGTTAAAGATGA
AGATGGTAACGAGGTACAATTATCACATGGCGTTTATATGCGGTTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CCTATCAAGCTCTTTATGCGACTTATGAACAATTCCAACATACCTATGCTAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAGGTTCGCAACTACAAGAGTGCTCGTCATGCAGCCCTAGCAGATAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGTAGCAGTTCGCAAGCATTTGCCCCTCTTGCATCGATACCTTGAGCTTCGTTCAAAGATTTTGGGGA
TTTCAGACCTCAAGATGTACGATGTCTACACACCACTTTCGTCTGTTGAATATAGTTTTACCTACCAAGAAGCCTTGAAA
AAAGCAGAAGAAGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGGGCCTACTCTGGTGGTTCTTACGATACAAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTAGATAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGTTATACTCGTGAAACG
CAGCCTTATGTTTACGGTGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACCAATGAAAATATTTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAACACGCGATTCACCAAGCGGATCAAAATGGTGAAGTCTTGACAAGTGATTTC
TTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAATCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCTTTTGCAGTCTTTGAACGTCGTTT
GAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667

Multiple sequence alignment