Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   THTHE16_RS08235 Genome accession   NC_017272
Coordinates   1552776..1553360 (+) Length   194 a.a.
NCBI ID   WP_008633233.1    Uniprot ID   Q72I96
Organism   Thermus thermophilus SG0.5JP17-16     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547776..1558360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS08210 (Ththe16_1615) - 1548507..1549262 (-) 756 WP_014510744.1 PP2C family protein-serine/threonine phosphatase -
  THTHE16_RS08215 (Ththe16_1616) - 1549289..1551004 (+) 1716 WP_014510745.1 hypothetical protein -
  THTHE16_RS08220 (Ththe16_1617) - 1551046..1551450 (+) 405 Protein_1617 MFS transporter -
  THTHE16_RS08225 (Ththe16_1618) hemB 1551447..1552427 (-) 981 WP_014510746.1 porphobilinogen synthase -
  THTHE16_RS08230 (Ththe16_1619) - 1552458..1552775 (+) 318 WP_008633232.1 YbaB/EbfC family nucleoid-associated protein -
  THTHE16_RS08235 (Ththe16_1620) recR 1552776..1553360 (+) 585 WP_008633233.1 recombination mediator RecR Machinery gene
  THTHE16_RS08240 (Ththe16_1621) - 1553363..1553746 (+) 384 WP_011173641.1 roadblock/LC7 domain-containing protein -
  THTHE16_RS08245 (Ththe16_1622) - 1553734..1554075 (+) 342 WP_011173642.1 roadblock/LC7 domain-containing protein -
  THTHE16_RS08250 (Ththe16_1623) - 1554060..1554398 (+) 339 WP_008633235.1 roadblock/LC7 domain-containing protein -
  THTHE16_RS08255 (Ththe16_1624) - 1554395..1554661 (+) 267 WP_008633236.1 DUF3467 domain-containing protein -
  THTHE16_RS08260 (Ththe16_1625) - 1554722..1556527 (-) 1806 WP_014510747.1 S9 family peptidase -
  THTHE16_RS08265 (Ththe16_1626) - 1556596..1557324 (+) 729 WP_014510748.1 Nif3-like dinuclear metal center hexameric protein -
  THTHE16_RS08270 (Ththe16_1627) tmk 1557325..1557921 (+) 597 WP_014510749.1 dTMP kinase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21207.39 Da        Isoelectric Point: 5.2052

>NTDB_id=36316 THTHE16_RS08235 WP_008633233.1 1552776..1553360(+) (recR) [Thermus thermophilus SG0.5JP17-16]
MRYPESLLKLTRALSRLPGIGPKTAQRLALHLAFHKEEAEALAEALEGLKRVRACRECGNLAEGELCPICQDEDRDRSLL
AVVESVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFRRLEGVEEVVLATSMTVEGEATALYLAEELKKRG
VRVTRPAYGLPVGGSLEYADEVTLGRALEGRRPV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=36316 THTHE16_RS08235 WP_008633233.1 1552776..1553360(+) (recR) [Thermus thermophilus SG0.5JP17-16]
ATGCGCTACCCGGAAAGCCTCCTCAAGCTCACCCGGGCCCTCTCCCGCCTCCCCGGCATCGGCCCCAAGACGGCCCAGCG
CCTGGCCCTCCACCTCGCCTTCCACAAGGAGGAGGCCGAAGCCCTGGCGGAGGCCCTGGAGGGGCTCAAGCGGGTCCGGG
CCTGCCGCGAGTGCGGCAACCTGGCCGAGGGGGAGCTCTGCCCCATCTGCCAGGACGAGGACCGGGACCGCTCCCTCCTC
GCCGTGGTGGAGAGCGTGGCCGACCTGTACGCCCTGGAGCGGAGCGGGGAGTTCCGGGGCCTCTACCACGTCCTGGGAGG
GGCCTTGAACCCCCTGGAGGGCATCGGCCCCAAGGAGCTGAACCTTGAGGGCCTCTTCCGGCGGCTGGAAGGCGTGGAGG
AGGTGGTCCTCGCCACCTCCATGACCGTGGAGGGGGAGGCCACCGCCCTCTACCTCGCCGAGGAGCTGAAGAAGCGGGGG
GTGCGGGTGACCCGGCCCGCCTACGGCCTCCCCGTGGGGGGGAGCCTGGAGTACGCCGACGAGGTGACCCTGGGCCGGGC
CCTGGAGGGGAGGCGGCCCGTCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-165)

RecR protein (RecR_ZnF)

(38-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72I96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.557
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

100

0.49
  recR Streptococcus pneumoniae R6

45.128

100

0.454

Multiple sequence alignment