Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3S72_RS05250 Genome accession   NZ_CP047800
Coordinates   1056982..1057968 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051982..1062968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S72_RS05225 (E3S72_05225) - 1052242..1052589 (-) 348 WP_001242103.1 hypothetical protein -
  E3S72_RS05230 (E3S72_05230) - 1052775..1053368 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  E3S72_RS05235 (E3S72_05235) - 1053472..1053837 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  E3S72_RS05240 (E3S72_05240) yjbH 1053860..1054666 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  E3S72_RS05245 (E3S72_05245) pepF 1055126..1056934 (-) 1809 WP_000082725.1 oligoendopeptidase F Regulator
  E3S72_RS05250 (E3S72_05250) coiA 1056982..1057968 (-) 987 WP_000959282.1 competence protein CoiA Machinery gene
  E3S72_RS05255 (E3S72_05255) - 1058136..1059455 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  E3S72_RS05260 (E3S72_05260) mecA 1059609..1060328 (-) 720 WP_001217728.1 adaptor protein MecA -
  E3S72_RS05265 (E3S72_05265) spxA 1060699..1061094 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3S72_RS05270 (E3S72_05270) trpS 1061388..1062377 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=363101 E3S72_RS05250 WP_000959282.1 1056982..1057968(-) (coiA) [Staphylococcus aureus strain UP_296]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=363101 E3S72_RS05250 WP_000959282.1 1056982..1057968(-) (coiA) [Staphylococcus aureus strain UP_296]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976