Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD725_RS07035 Genome accession   NZ_CP040297
Coordinates   1659160..1660686 (+) Length   508 a.a.
NCBI ID   WP_179047457.1    Uniprot ID   -
Organism   Nostoc sp. TCL26-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1654160..1665686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD725_RS07000 (FD725_07015) - 1654236..1655093 (-) 858 WP_179047451.1 DUF4351 domain-containing protein -
  FD725_RS07005 (FD725_07020) - 1655208..1656041 (-) 834 WP_179047452.1 DUF4351 domain-containing protein -
  FD725_RS07010 (FD725_07025) - 1656053..1656571 (-) 519 WP_179047453.1 DUF456 domain-containing protein -
  FD725_RS07015 (FD725_07030) - 1656664..1656999 (-) 336 WP_179047454.1 XisI protein -
  FD725_RS07020 (FD725_07035) - 1656987..1657403 (-) 417 WP_179047455.1 XisH family protein -
  FD725_RS07025 (FD725_07040) - 1657431..1658075 (-) 645 WP_179047456.1 cofactor assembly of complex C subunit B -
  FD725_RS07030 (FD725_07045) rpaB 1658254..1658982 (-) 729 WP_017742704.1 response regulator transcription factor RpaB -
  FD725_RS07035 (FD725_07050) radA 1659160..1660686 (+) 1527 WP_179047457.1 DNA repair protein RadA Machinery gene
  FD725_RS07040 (FD725_07055) - 1660923..1661810 (+) 888 WP_179047458.1 PEP-CTERM sorting domain-containing protein -
  FD725_RS07045 (FD725_07060) - 1661831..1662205 (-) 375 WP_179047459.1 hypothetical protein -
  FD725_RS07050 (FD725_07065) - 1662608..1663558 (+) 951 WP_179047460.1 RpoD/SigA family RNA polymerase sigma factor -
  FD725_RS07055 (FD725_07070) - 1663795..1664502 (-) 708 WP_179047461.1 J domain-containing protein -
  FD725_RS07060 (FD725_07075) cysK 1664520..1665482 (-) 963 WP_179047462.1 cysteine synthase A -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54835.72 Da        Isoelectric Point: 4.8824

>NTDB_id=363030 FD725_RS07035 WP_179047457.1 1659160..1660686(+) (radA) [Nostoc sp. TCL26-01]
MAKPKTFYICNECGSESPQWFGKCPACGTYNSLEEQITIQSSVDVPSRGVGGWQSQSNGKPGAKPAKPRASLTFDQITDR
QIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQRYRILYVTGEESGQQVKLRASRLGVSKPLNV
VSDENETTVTEASVPEIVETIGSDLYVLPETDLEEILREVDSLKPNVTVIDSIQTVFFPALTSAPGSVAQVRECTAALMK
VAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVEHGLREVPNPSEL
FLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAATGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGL
NVAEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRAVSQMELRLKEAAKLGFKRAIVPKGQKFPNLNIEILPVS
KVIDAIIAAIPHQELTEEDFNLDEEQEE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=363030 FD725_RS07035 WP_179047457.1 1659160..1660686(+) (radA) [Nostoc sp. TCL26-01]
ATGGCAAAGCCCAAAACCTTTTACATTTGTAACGAATGTGGCTCAGAATCTCCCCAGTGGTTTGGTAAGTGTCCCGCTTG
TGGTACTTACAACTCTTTAGAAGAACAGATTACCATTCAATCCTCAGTAGATGTGCCTAGTCGGGGTGTGGGTGGTTGGC
AAAGTCAAAGTAATGGTAAACCTGGGGCAAAGCCAGCTAAACCAAGGGCTTCCCTCACATTTGATCAAATTACCGATCGC
CAAATTGCTCGATGGGAATCTGGTTACGGTGAACTAGATCGAGTGTTAGGGGGTGGTGTGGTTCCTGGTTCAATGGTGCT
GATTGGTGGTGATCCCGGTATCGGTAAATCTACTTTGCTATTGCAGGTATCAAACCAACTGGCGCAAAGATATCGCATTT
TATATGTCACAGGTGAAGAATCAGGACAACAAGTAAAATTGCGGGCTTCTCGCTTGGGTGTTTCCAAGCCTCTCAATGTT
GTTAGTGATGAGAATGAAACAACAGTCACAGAGGCATCAGTACCGGAAATTGTTGAGACTATAGGTTCTGATTTATACGT
ATTACCGGAAACAGATTTAGAAGAAATCCTGCGAGAAGTAGATTCTCTCAAGCCAAATGTGACAGTCATCGATAGTATTC
AAACCGTGTTTTTTCCTGCTTTGACCTCAGCACCTGGTTCAGTCGCTCAGGTAAGAGAATGCACAGCCGCCTTAATGAAG
GTGGCAAAACACGAAGATATTACCATGCTAATTGTCGGACACGTAACCAAAGAAGGGGCGATCGCCGGGCCGAAAGTTTT
AGAACACCTAGTAGATACAGTACTGTATTTTGAAGGCGATCGCTTTGCCTCTCATCGATTGTTACGTACCGTCAAAAACC
GTTTTGGCGCGACACACGAAATCGGCATCTTTGAAATGGTAGAACACGGGCTAAGGGAAGTCCCCAACCCCAGTGAGTTA
TTTTTAGGCAACCGTGATGATCCGGCTCCTGGGACAGCAATTGTCGTAGCTTGTGAAGGTACACGTCCTATTGTTGTGGA
ATTACAAGCCTTAGTCAGTCCCACCAGTTATCCCTCACCGCGCCGGGCTGCCACAGGTATAGATTATAACCGTCTAGTGC
AAATCTTAGCGGTATTAGAAAAGCGAGTCGGGATTCCCATGTCCAAACTAGATTCCTACGTCGCCTCGGCGGGAGGATTG
AACGTCGCCGAACCAGCCGTAGATTTAGGAATTGCGATCGCCATCGTTGCCAGTTTCCGCGATCGCATCGTTGATCCTGG
TACAGTATTAATTGGTGAAGTCGGCTTGGGTGGACAAGTACGAGCCGTTTCTCAGATGGAACTGCGGTTAAAAGAAGCAG
CTAAATTAGGATTTAAAAGAGCGATCGTTCCCAAGGGGCAAAAATTCCCCAACTTGAACATTGAAATTCTTCCAGTTTCC
AAAGTCATAGATGCAATTATCGCTGCCATTCCCCACCAAGAACTCACAGAAGAAGATTTCAATTTAGATGAAGAGCAGGA
GGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(405-465)

KaiC (ATPase)

(88-294)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.713

96.654

0.49
  radA Streptococcus mitis SK321

46.392

95.472

0.443
  radA Streptococcus pneumoniae Rx1

47.742

91.535

0.437
  radA Streptococcus pneumoniae D39

47.742

91.535

0.437
  radA Streptococcus pneumoniae R6

47.742

91.535

0.437
  radA Streptococcus pneumoniae TIGR4

47.742

91.535

0.437
  radA Streptococcus mitis NCTC 12261

47.742

91.535

0.437

Multiple sequence alignment