Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FED54_RS06560 Genome accession   NZ_CP040259
Coordinates   1374810..1376231 (-) Length   473 a.a.
NCBI ID   WP_000840547.1    Uniprot ID   A0AAQ0VGX2
Organism   Acinetobacter baumannii strain P7774     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369810..1381231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS06545 (FED54_06545) lptG 1370863..1371933 (+) 1071 WP_000881091.1 LPS export ABC transporter permease LptG -
  FED54_RS06550 (FED54_06550) gpmI 1372059..1373606 (+) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FED54_RS06555 (FED54_06555) - 1373622..1374806 (+) 1185 WP_000939107.1 S41 family peptidase -
  FED54_RS06560 (FED54_06560) pilR 1374810..1376231 (-) 1422 WP_000840547.1 sigma-54-dependent transcriptional regulator Regulator
  FED54_RS06565 (FED54_06565) pilS 1376256..1377824 (-) 1569 WP_001160341.1 sensor histidine kinase Regulator
  FED54_RS06570 (FED54_06570) - 1377835..1378470 (-) 636 WP_000633799.1 response regulator -
  FED54_RS06575 (FED54_06575) pbpG 1378683..1379729 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  FED54_RS06580 (FED54_06580) thrC 1379837..1380976 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52994.15 Da        Isoelectric Point: 6.6690

>NTDB_id=362925 FED54_RS06560 WP_000840547.1 1374810..1376231(-) (pilR) [Acinetobacter baumannii strain P7774]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=362925 FED54_RS06560 WP_000840547.1 1374810..1376231(-) (pilR) [Acinetobacter baumannii strain P7774]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATTGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATCCGACCCGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGTCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.943

100

0.989
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495

Multiple sequence alignment