Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FED54_RS03395 Genome accession   NZ_CP040259
Coordinates   711100..711918 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain P7774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 706100..716918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS03380 (FED54_03380) pilE 706316..706741 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  FED54_RS03385 (FED54_03385) pilY2 706738..707220 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  FED54_RS03390 (FED54_03390) - 707233..711088 (-) 3856 Protein_651 PilC/PilY family type IV pilus protein -
  FED54_RS03395 (FED54_03395) pilX 711100..711918 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FED54_RS03400 (FED54_03400) pilW 711915..712916 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  FED54_RS03405 (FED54_03405) pilV 712917..713477 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FED54_RS03410 (FED54_03410) fimU 713471..713944 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FED54_RS03415 (FED54_03415) ispH 714114..715064 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FED54_RS03420 (FED54_03420) gmk 715187..715816 (+) 630 WP_000015937.1 guanylate kinase -
  FED54_RS03425 (FED54_03425) rpoZ 715889..716167 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FED54_RS03430 (FED54_03430) - 716205..716335 (+) 131 Protein_659 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=362910 FED54_RS03395 WP_000149374.1 711100..711918(-) (pilX) [Acinetobacter baumannii strain P7774]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=362910 FED54_RS03395 WP_000149374.1 711100..711918(-) (pilX) [Acinetobacter baumannii strain P7774]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment