Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FED54_RS03380 Genome accession   NZ_CP040259
Coordinates   706316..706741 (-) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain P7774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701316..711741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS03350 (FED54_03350) - 701847..702878 (+) 1032 Protein_643 lipase secretion chaperone -
  FED54_RS03355 (FED54_03355) - 702993..703934 (+) 942 WP_085943974.1 lipase family alpha/beta hydrolase -
  FED54_RS03360 (FED54_03360) rplS 703987..704355 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  FED54_RS03365 (FED54_03365) trmD 704563..705304 (-) 742 Protein_646 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FED54_RS03370 (FED54_03370) rimM 705350..705898 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  FED54_RS03375 (FED54_03375) rpsP 705918..706169 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  FED54_RS03380 (FED54_03380) pilE 706316..706741 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  FED54_RS03385 (FED54_03385) pilY2 706738..707220 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  FED54_RS03390 (FED54_03390) - 707233..711088 (-) 3856 Protein_651 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=362908 FED54_RS03380 WP_000788337.1 706316..706741(-) (pilE) [Acinetobacter baumannii strain P7774]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=362908 FED54_RS03380 WP_000788337.1 706316..706741(-) (pilE) [Acinetobacter baumannii strain P7774]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496

Multiple sequence alignment