Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   FEF05_RS09160 Genome accession   NZ_CP040243
Coordinates   1825301..1825642 (-) Length   113 a.a.
NCBI ID   WP_149351107.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820301..1830642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS09125 (FEF05_09130) lpxH 1820608..1821336 (-) 729 WP_010786290.1 UDP-2,3-diacylglucosamine diphosphatase -
  FEF05_RS09130 (FEF05_09135) - 1821442..1821969 (-) 528 WP_010786291.1 DUF1523 family protein -
  FEF05_RS09135 (FEF05_09140) - 1822007..1822789 (-) 783 WP_010786292.1 TatD family hydrolase -
  FEF05_RS09140 (FEF05_09145) - 1822803..1823300 (-) 498 WP_149351105.1 GNAT family N-acetyltransferase -
  FEF05_RS09145 (FEF05_09150) - 1823301..1823579 (-) 279 WP_005714674.1 DUF1778 domain-containing protein -
  FEF05_RS09150 (FEF05_09155) epmA 1823632..1824612 (-) 981 WP_149351106.1 elongation factor P--(R)-beta-lysine ligase -
  FEF05_RS09155 (FEF05_09160) - 1824753..1825201 (+) 449 Protein_1784 IS5 family transposase -
  FEF05_RS09160 (FEF05_09165) comEA/comE1 1825301..1825642 (-) 342 WP_149351107.1 ComEA family DNA-binding protein Machinery gene
  FEF05_RS09165 (FEF05_09170) - 1825900..1827165 (+) 1266 WP_149351108.1 LysM-like peptidoglycan-binding domain-containing protein -
  FEF05_RS09170 (FEF05_09175) - 1827225..1827623 (+) 399 WP_005714011.1 MliC family protein -
  FEF05_RS09175 (FEF05_09180) waaF 1827632..1828684 (+) 1053 WP_149351109.1 lipopolysaccharide heptosyltransferase II -
  FEF05_RS09180 (FEF05_09185) - 1828780..1829367 (+) 588 WP_010786297.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12377.24 Da        Isoelectric Point: 9.8972

>NTDB_id=362844 FEF05_RS09160 WP_149351107.1 1825301..1825642(-) (comEA/comE1) [Glaesserella parasuis strain HPS-1]
MKKLSRYTFGLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=362844 FEF05_RS09160 WP_149351107.1 1825301..1825642(-) (comEA/comE1) [Glaesserella parasuis strain HPS-1]
ATGAAAAAACTTTCTCGTTACACATTCGGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

97.345

100

0.973
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602

Multiple sequence alignment