Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FD987_RS03415 Genome accession   NZ_CP040239
Coordinates   663120..663890 (+) Length   256 a.a.
NCBI ID   WP_002781662.1    Uniprot ID   A0A3Z9V747
Organism   Campylobacter coli strain S9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 658120..668890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS03400 (FD987_03400) - 658996..660930 (-) 1935 WP_002776352.1 ribonuclease R family protein -
  FD987_RS03405 (FD987_03405) ilvC 661053..662075 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  FD987_RS03410 (FD987_03410) - 662078..663130 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  FD987_RS03415 (FD987_03415) dprA 663120..663890 (+) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  FD987_RS03420 (FD987_03420) ruvX 663887..664267 (+) 381 WP_053875443.1 Holliday junction resolvase RuvX -
  FD987_RS03425 (FD987_03425) - 664278..665132 (+) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FD987_RS03430 (FD987_03430) msrA 665355..665855 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FD987_RS03435 (FD987_03435) ppa 665903..666421 (-) 519 WP_002776378.1 inorganic diphosphatase -
  FD987_RS03440 (FD987_03440) - 666431..667006 (-) 576 WP_002781658.1 adenylate kinase -
  FD987_RS03445 (FD987_03445) aspS 667003..668754 (-) 1752 WP_053875444.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=362802 FD987_RS03415 WP_002781662.1 663120..663890(+) (dprA) [Campylobacter coli strain S9]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=362802 FD987_RS03415 WP_002781662.1 663120..663890(+) (dprA) [Campylobacter coli strain S9]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9V747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment