Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FD747_RS06430 Genome accession   NZ_CP040233
Coordinates   1314567..1315253 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD1696     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1309567..1320253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD747_RS06410 (FD747_08400) rpsT 1310481..1310732 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  FD747_RS06415 (FD747_08405) holA 1310777..1311751 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  FD747_RS06420 (FD747_08410) comEC 1311808..1314009 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FD747_RS06425 (FD747_08415) - 1314014..1314475 (-) 462 WP_000439690.1 ComE operon protein 2 -
  FD747_RS06430 (FD747_08420) comEA 1314567..1315253 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  FD747_RS06435 (FD747_08425) - 1315293..1316009 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  FD747_RS06440 (FD747_08430) rsfS 1316012..1316365 (-) 354 WP_001088020.1 ribosome silencing factor -
  FD747_RS06445 (FD747_08435) yqeK 1316366..1316950 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FD747_RS06450 (FD747_08440) nadD 1316940..1317509 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  FD747_RS06455 (FD747_08445) yhbY 1317512..1317802 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  FD747_RS06460 (FD747_08450) aroE 1317806..1318612 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  FD747_RS06465 (FD747_08455) yqeH 1318626..1319726 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=362752 FD747_RS06430 WP_001825349.1 1314567..1315253(-) (comEA) [Staphylococcus aureus strain GD1696]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=362752 FD747_RS06430 WP_001825349.1 1314567..1315253(-) (comEA) [Staphylococcus aureus strain GD1696]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment