Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FD735_RS04055 Genome accession   NZ_CP040231
Coordinates   747035..748837 (+) Length   600 a.a.
NCBI ID   WP_139658551.1    Uniprot ID   A0A5B7Y5G3
Organism   Streptococcus sp. 1643     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 742035..753837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS04035 (FD735_04035) smpB 743307..743774 (+) 468 WP_139658549.1 SsrA-binding protein SmpB -
  FD735_RS04040 (FD735_04040) tehB 743789..744649 (+) 861 WP_000413060.1 SAM-dependent methyltransferase TehB -
  FD735_RS04045 (FD735_04045) - 744836..745984 (+) 1149 WP_125391064.1 DUF1887 family protein -
  FD735_RS04050 (FD735_04050) coiA 746060..747016 (+) 957 WP_139658550.1 competence protein CoiA Machinery gene
  FD735_RS04055 (FD735_04055) pepF 747035..748837 (+) 1803 WP_139658551.1 oligoendopeptidase F Regulator
  FD735_RS04060 (FD735_04060) - 748839..749552 (+) 714 WP_139658552.1 O-methyltransferase -
  FD735_RS10020 - 749601..749855 (+) 255 WP_369689503.1 recombinase family protein -
  FD735_RS10025 - 749810..749926 (+) 117 WP_369689506.1 recombinase family protein -
  FD735_RS10030 - 749948..750223 (+) 276 WP_369689504.1 hypothetical protein -
  FD735_RS04070 (FD735_04070) - 750461..753424 (+) 2964 WP_139658553.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69866.85 Da        Isoelectric Point: 4.6267

>NTDB_id=362644 FD735_RS04055 WP_139658551.1 747035..748837(+) (pepF) [Streptococcus sp. 1643]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEIREEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=362644 FD735_RS04055 WP_139658551.1 747035..748837(+) (pepF) [Streptococcus sp. 1643]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCATCCCAGTATGAGGGACATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAACTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAAGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGGGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAACACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCACAACGTGAGGAAGAATTACTTGCTGGAGCA
GGAGAAATCTTTGGCGCTGCTAGTGAAACTTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGTAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACATATGAGCAATTCCAACACACTTATGCGAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAATTTTGTTCCAGAAAGTGTCTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTTTTGCATCGTTACCTCGAGCTTCGTTCAAAAATCTTGGGTA
TTTCTGATCTCAAGATGTACGATGTCTACACACCACTATCTTCAGTAGAATACAGCTTTACCTACGAAGAAGCCTTGAAG
AAAGCAGAAGAGGCCTTGGCAGTCTTGGGTGACGACTACTTGAGCCGTGTCAAACGTGCCTTTAGCGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAACGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTCATGCTTCTCAACT
GGCAGGACAATTTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCTAGCTATACTCGTGAAACC
CAACCTTATGTTTACGGAGATTACTCTATCTTCTTGGCTGAGATTGCCTCAACGACCAACGAAAACATCTTGACTGAGAA
ATTATTGGAAGAAGTAGAAGACGATGCAACTCGCTTTGCTATCCTCAATAACTTCTTGGACGGCTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCCATTCACCAAGCTGATCAAAACGGTGAAGTCTTGACAAGCGATTTC
CTCAATAAGCTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCAACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCTGGTAAGTCAGACTATCCGCTC
AATGTCATGAGAAAAGCGGGTGTGGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCTCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y5G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.617

99.333

0.672

Multiple sequence alignment