Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FD735_RS02840 Genome accession   NZ_CP040231
Coordinates   510006..511238 (+) Length   410 a.a.
NCBI ID   WP_139658411.1    Uniprot ID   A0A5B7Y7P3
Organism   Streptococcus sp. 1643     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 505006..516238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS02805 (FD735_02805) galE 505678..506697 (+) 1020 WP_139658409.1 UDP-glucose 4-epimerase GalE -
  FD735_RS02810 (FD735_02810) - 506681..507664 (+) 984 WP_255296292.1 glycosyltransferase family 2 protein -
  FD735_RS02815 (FD735_02815) - 507740..507943 (-) 204 WP_161802764.1 ferredoxin -
  FD735_RS02820 (FD735_02820) - 507989..508495 (+) 507 WP_049549902.1 SAG1386/EF1546 family surface-associated protein -
  FD735_RS02825 (FD735_02825) cmk 508505..509179 (+) 675 WP_000849413.1 (d)CMP kinase -
  FD735_RS02830 (FD735_02830) - 509298..509804 (+) 507 WP_139658410.1 dihydrofolate reductase -
  FD735_RS02835 (FD735_02835) - 509804..509974 (+) 171 WP_000442252.1 hypothetical protein -
  FD735_RS02840 (FD735_02840) clpX 510006..511238 (+) 1233 WP_139658411.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FD735_RS02845 (FD735_02845) yihA 511247..511834 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FD735_RS02850 (FD735_02850) - 511844..512224 (+) 381 WP_061427825.1 RidA family protein -
  FD735_RS02855 (FD735_02855) rapZ 512276..513166 (+) 891 WP_000163039.1 RNase adapter RapZ -
  FD735_RS02860 (FD735_02860) - 513163..514140 (+) 978 WP_139658412.1 YvcK family protein -
  FD735_RS02865 (FD735_02865) whiA 514137..515048 (+) 912 WP_139658413.1 DNA-binding protein WhiA -
  FD735_RS02870 (FD735_02870) - 515081..516049 (-) 969 WP_139658414.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45700.29 Da        Isoelectric Point: 4.4581

>NTDB_id=362636 FD735_RS02840 WP_139658411.1 510006..511238(+) (clpX) [Streptococcus sp. 1643]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEILADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=362636 FD735_RS02840 WP_139658411.1 510006..511238(+) (clpX) [Streptococcus sp. 1643]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAA
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTGAACCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATCAATTTCCACGATACGCGAGAAGAGTCTGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGTCCAACTGGTTCTGGGAAAACTTTCTTGGCCCAGACTTTGGCTA
AGAGCTTGAACGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTAGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCGGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACCGTTGCTAGCGTGCCGCCTCAAGGTGGACGTAAACATCCACAACAAGAGATGATTCAAGTAGATACC
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGTATCGAAGAAATCGTTAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGCCAAAATAACAAGGCGATTGATGAAAACAGCTCCTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGT
ATCCTGAAAGAACCAAGAAATGCCTTGGTCAAACAATACCAAACCTTACTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAAATTGCCAATAAGGCTATTGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7Y7P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment