Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   FD482_RS04415 Genome accession   NZ_CP040229
Coordinates   942107..942676 (-) Length   189 a.a.
NCBI ID   WP_138766950.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD487     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 937107..947676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD482_RS04395 (FD482_04550) - 938610..939968 (+) 1359 WP_000021872.1 TrkH family potassium uptake protein -
  FD482_RS04400 (FD482_04555) - 940107..941618 (+) 1512 WP_000414168.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  FD482_RS04415 (FD482_04570) comK/comK1 942107..942676 (-) 570 WP_138766950.1 competence protein ComK Regulator
  FD482_RS04420 (FD482_04575) - 942886..943104 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  FD482_RS04425 (FD482_04580) - 943185..944171 (-) 987 WP_000668814.1 lipoate--protein ligase -
  FD482_RS04430 (FD482_04585) - 944370..944546 (+) 177 WP_000214898.1 YkvS family protein -
  FD482_RS04435 (FD482_04590) - 944561..945163 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FD482_RS13800 (FD482_04595) - 945478..945540 (+) 63 WP_240785570.1 putative holin-like toxin -
  FD482_RS04445 (FD482_04600) - 946175..946459 (+) 285 WP_000790905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=362536 FD482_RS04415 WP_138766950.1 942107..942676(-) (comK/comK1) [Staphylococcus aureus strain GD487]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYIGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=362536 FD482_RS04415 WP_138766950.1 942107..942676(-) (comK/comK1) [Staphylococcus aureus strain GD487]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATATTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATCAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment