Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3S87_RS09950 Genome accession   NZ_CP047793
Coordinates   2050404..2051516 (-) Length   370 a.a.
NCBI ID   WP_000775113.1    Uniprot ID   P68863
Organism   Staphylococcus aureus strain UP_764     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2045404..2056516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S87_RS09940 (E3S87_09940) gyrA 2045763..2048423 (-) 2661 WP_000819098.1 DNA gyrase subunit A -
  E3S87_RS09945 (E3S87_09945) gyrB 2048460..2050394 (-) 1935 WP_000255583.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3S87_RS09950 (E3S87_09950) recF 2050404..2051516 (-) 1113 WP_000775113.1 DNA replication/repair protein RecF Machinery gene
  E3S87_RS09955 (E3S87_09955) yaaA 2051513..2051758 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3S87_RS09960 (E3S87_09960) dnaN 2052139..2053272 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3S87_RS09965 (E3S87_09965) dnaA 2053550..2054911 (-) 1362 WP_108627825.1 chromosomal replication initiator protein DnaA -
  E3S87_RS09970 (E3S87_09970) rpmH 2055642..2055779 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3S87_RS09975 (E3S87_09975) rnpA 2055900..2056253 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42415.43 Da        Isoelectric Point: 6.4362

>NTDB_id=362507 E3S87_RS09950 WP_000775113.1 2050404..2051516(-) (recF) [Staphylococcus aureus strain UP_764]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=362507 E3S87_RS09950 WP_000775113.1 2050404..2051516(-) (recF) [Staphylococcus aureus strain UP_764]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P68863

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497