Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3S88_RS12140 Genome accession   NZ_CP047792
Coordinates   2436399..2437511 (+) Length   370 a.a.
NCBI ID   WP_124780870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2431399..2442511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS12115 (E3S88_12115) rnpA 2431662..2432015 (-) 354 WP_001789343.1 ribonuclease P protein component -
  E3S88_RS12120 (E3S88_12120) rpmH 2432136..2432273 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3S88_RS12125 (E3S88_12125) dnaA 2433004..2434365 (+) 1362 WP_054193422.1 chromosomal replication initiator protein DnaA -
  E3S88_RS12130 (E3S88_12130) dnaN 2434643..2435776 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3S88_RS12135 (E3S88_12135) yaaA 2436157..2436402 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3S88_RS12140 (E3S88_12140) recF 2436399..2437511 (+) 1113 WP_124780870.1 DNA replication/repair protein RecF Machinery gene
  E3S88_RS12145 (E3S88_12145) gyrB 2437521..2439455 (+) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3S88_RS12150 (E3S88_12150) gyrA 2439492..2442155 (+) 2664 WP_124780872.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42443.45 Da        Isoelectric Point: 6.4362

>NTDB_id=362428 E3S88_RS12140 WP_124780870.1 2436399..2437511(+) (recF) [Staphylococcus aureus strain UP_794]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLARPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=362428 E3S88_RS12140 WP_124780870.1 2436399..2437511(+) (recF) [Staphylococcus aureus strain UP_794]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAGACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGACGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAACAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.598

100

0.5