Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FDZ78_RS14035 Genome accession   NZ_CP040121
Coordinates   3271886..3273259 (-) Length   457 a.a.
NCBI ID   WP_136408809.1    Uniprot ID   A0AAE6BZ31
Organism   Duncaniella sp. B8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3266886..3278259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDZ78_RS14015 (FDZ78_14015) rlmD 3267652..3269067 (-) 1416 WP_107031421.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  FDZ78_RS14020 (FDZ78_14020) - 3269245..3270123 (-) 879 WP_136408806.1 CPBP family intramembrane glutamic endopeptidase -
  FDZ78_RS14025 (FDZ78_14025) - 3270143..3270856 (-) 714 WP_136408807.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FDZ78_RS14030 (FDZ78_14030) - 3270865..3271755 (-) 891 WP_240740295.1 PCMD domain-containing protein -
  FDZ78_RS14035 (FDZ78_14035) radA 3271886..3273259 (-) 1374 WP_136408809.1 DNA repair protein RadA Machinery gene
  FDZ78_RS14040 (FDZ78_14040) - 3273321..3274085 (-) 765 WP_123399860.1 RNA methyltransferase -
  FDZ78_RS14045 (FDZ78_14045) - 3274300..3275688 (+) 1389 WP_124075602.1 RNase adapter RapZ -
  FDZ78_RS14050 (FDZ78_14050) - 3275685..3276419 (+) 735 WP_124075603.1 nucleotidyltransferase family protein -
  FDZ78_RS14055 (FDZ78_14055) menD 3276394..3278082 (-) 1689 WP_124075604.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49849.58 Da        Isoelectric Point: 7.1745

>NTDB_id=362327 FDZ78_RS14035 WP_136408809.1 3271886..3273259(-) (radA) [Duncaniella sp. B8]
MKGNKTAWFCTSCGAESSKWQGKCPACGEWNTMVEERIVSDDKKSRSLTPVRLKQTRTKPQLIHEIETSDEARIKMPSGE
LNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQNILSIRSRKVLYISGEESAKQLKMRADRIGRPNDNVYIVCETSLENIKD
HIEDVDPGLVVVDSIQTIASDAIESVAGSVSQVRECAAQLLKYAKETSVPVLLIGHITKEGSIAGPKVLEHIVDAVLQFE
GDRQNIYRILRSIKNRFGSTAELGVYEMCQRGLREVSNPSEMFLSQNDEELSGISIGVTMEGVRAFLIEVQALVSTAAYG
TPQRSVTGFDSKRMNMLLAVLEKRVGFKLAAKDVFLNIAGGLKVNDPSLDLAVICAILSSNVDITIPNRICMAGEVGLSG
EVRPVSRIEQRIREAEKLGMETIIIPRNNLKGIDTSGLGIRIVEVAKVEEAFRTLFA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=362327 FDZ78_RS14035 WP_136408809.1 3271886..3273259(-) (radA) [Duncaniella sp. B8]
ATGAAAGGTAATAAGACAGCGTGGTTCTGCACAAGTTGTGGCGCCGAATCGTCAAAATGGCAGGGAAAATGTCCGGCTTG
CGGCGAATGGAACACTATGGTAGAGGAGCGGATAGTGTCAGATGACAAAAAATCGCGATCACTCACTCCTGTCAGGCTGA
AACAGACAAGAACAAAGCCTCAGCTGATTCATGAGATAGAAACCAGCGATGAGGCCCGCATCAAAATGCCGAGTGGAGAG
CTTAACCGTGTTCTCGGCGGCGGTCTGGTGCCCGGAAGCCTCGTGCTTATAGGTGGAGAGCCGGGAATAGGGAAATCCAC
GCTTGTACTTCAGAACATACTTTCGATACGCTCCAGAAAAGTCTTATATATTTCCGGTGAGGAAAGTGCAAAACAGTTAA
AAATGCGGGCAGACCGTATAGGCCGTCCGAATGACAATGTATATATAGTCTGTGAGACTTCTCTTGAGAATATAAAGGAT
CACATTGAAGATGTTGATCCAGGACTTGTGGTGGTCGATTCGATACAAACAATAGCCTCTGACGCTATAGAGTCAGTAGC
CGGAAGTGTCTCTCAGGTAAGGGAATGTGCCGCCCAACTGCTGAAATACGCAAAAGAAACTTCCGTTCCGGTATTGCTGA
TAGGGCATATAACCAAGGAAGGCAGCATTGCAGGCCCGAAAGTGCTTGAGCACATTGTCGATGCTGTGCTACAGTTCGAA
GGAGACCGCCAGAATATATACCGAATTCTGAGGTCCATTAAAAACCGTTTCGGATCTACAGCCGAGTTAGGCGTCTATGA
GATGTGTCAGCGAGGACTCAGAGAAGTATCCAACCCCTCGGAAATGTTCCTTTCGCAGAATGACGAGGAACTCTCCGGAA
TATCTATCGGGGTGACGATGGAAGGTGTCAGAGCATTTCTTATCGAGGTGCAGGCATTGGTCAGTACTGCGGCCTACGGC
ACTCCGCAGCGCTCGGTGACAGGCTTCGACTCCAAACGCATGAATATGCTCTTGGCTGTGCTTGAAAAACGGGTCGGGTT
CAAGCTTGCGGCAAAGGATGTCTTTCTCAATATTGCAGGTGGTCTGAAAGTCAACGATCCATCGCTGGATCTCGCTGTCA
TCTGTGCGATTCTTTCTTCCAATGTAGATATAACCATCCCGAACCGTATCTGTATGGCTGGCGAAGTCGGGCTGTCCGGA
GAAGTTCGTCCGGTCAGCCGCATCGAACAGCGAATACGCGAAGCTGAAAAACTTGGGATGGAAACGATTATAATTCCACG
CAATAATCTCAAAGGCATCGACACTTCAGGACTTGGCATCAGGATTGTTGAAGTGGCAAAGGTAGAGGAGGCTTTCAGAA
CTCTCTTTGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(320-429)

AAA domain (AAA_25)

(65-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

100

0.545
  radA Streptococcus mitis SK321

47.598

100

0.477
  radA Streptococcus mitis NCTC 12261

47.598

100

0.477
  radA Streptococcus pneumoniae Rx1

47.598

100

0.477
  radA Streptococcus pneumoniae D39

47.598

100

0.477
  radA Streptococcus pneumoniae R6

47.598

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.598

100

0.477

Multiple sequence alignment