Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FDQ49_RS11570 Genome accession   NZ_CP040105
Coordinates   2454892..2455527 (-) Length   211 a.a.
NCBI ID   WP_022575960.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2449892..2460527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11535 (FDQ49_11535) mlaE 2450220..2450996 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  FDQ49_RS11540 (FDQ49_11540) - 2450996..2451679 (+) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FDQ49_RS11545 (FDQ49_11545) - 2451706..2452347 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  FDQ49_RS11550 (FDQ49_11550) - 2452359..2452646 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  FDQ49_RS11555 (FDQ49_11555) - 2452721..2453734 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  FDQ49_RS11560 (FDQ49_11560) - 2453892..2454473 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  FDQ49_RS11565 (FDQ49_11565) - 2454488..2454889 (+) 402 WP_022575961.1 NUDIX domain-containing protein -
  FDQ49_RS11570 (FDQ49_11570) comF 2454892..2455527 (-) 636 WP_022575960.1 ComF family protein Machinery gene
  FDQ49_RS11575 (FDQ49_11575) recG 2455520..2457565 (-) 2046 WP_022575959.1 ATP-dependent DNA helicase RecG -
  FDQ49_RS11580 (FDQ49_11580) - 2457586..2458401 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  FDQ49_RS11585 (FDQ49_11585) - 2458481..2459467 (+) 987 WP_031225385.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24631.87 Da        Isoelectric Point: 9.8046

>NTDB_id=362245 FDQ49_RS11570 WP_022575960.1 2454892..2455527(-) (comF) [Acinetobacter nosocomialis M2]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLMQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=362245 FDQ49_RS11570 WP_022575960.1 2454892..2455527(-) (comF) [Acinetobacter nosocomialis M2]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTATGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTGTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment