Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   FDQ49_RS11205 Genome accession   NZ_CP040105
Coordinates   2378363..2379361 (+) Length   332 a.a.
NCBI ID   WP_022575991.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2373363..2384361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11175 (FDQ49_11175) - 2374944..2375075 (-) 132 WP_102990545.1 hypothetical protein -
  FDQ49_RS11180 (FDQ49_11180) rpoZ 2375114..2375392 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FDQ49_RS11185 (FDQ49_11185) gmk 2375465..2376094 (-) 630 WP_002051739.1 guanylate kinase -
  FDQ49_RS11190 (FDQ49_11190) ispH 2376217..2377167 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FDQ49_RS11195 (FDQ49_11195) fimU 2377336..2377809 (+) 474 WP_022575992.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FDQ49_RS11200 (FDQ49_11200) pilV 2377803..2378363 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  FDQ49_RS11205 (FDQ49_11205) pilW 2378363..2379361 (+) 999 WP_022575991.1 PilW family protein Machinery gene
  FDQ49_RS11210 (FDQ49_11210) pilX 2379358..2380173 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FDQ49_RS11215 (FDQ49_11215) pilY1 2380173..2384357 (+) 4185 WP_022575990.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35800.32 Da        Isoelectric Point: 6.2394

>NTDB_id=362240 FDQ49_RS11205 WP_022575991.1 2378363..2379361(+) (pilW) [Acinetobacter nosocomialis M2]
MNRSFLEKQQGFTLIELMVALALGLILVAAATQLFIGGILSSRLQKANAEIQDSGIFGLDYIVRDIRLVNYGNIINPQLN
DTTPWGGIVLTGSTATNNNNVNFVPNTGTNAYIADALLSRGAGDTVSTLNNQWKGLSNIQNSSNATIQSDQLTIQFIAPS
NMTNCEGANVLAGDLVVERYFLRLDNNGSSQQDYALACDANTPSNTPTAQPTSVDGFGDAGQIILPRIDHFHVLLGAKNA
AGNFAYYTIPQYRVAAQAARDATPTQLAPRILSIQISVLARSTNNAQNKAVDLNQTFVMLDQTVHASDTSTRFLRRVYST
TIALRNAMGEKL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=362240 FDQ49_RS11205 WP_022575991.1 2378363..2379361(+) (pilW) [Acinetobacter nosocomialis M2]
ATGAATCGATCATTTTTAGAAAAGCAGCAAGGATTTACCTTAATTGAACTTATGGTTGCTTTGGCTTTAGGTTTAATTCT
TGTTGCAGCTGCTACTCAATTGTTTATAGGTGGAATTTTATCAAGTCGTCTACAAAAAGCGAATGCTGAAATACAAGATA
GTGGTATTTTTGGTCTGGATTATATTGTACGTGACATACGACTTGTCAATTATGGAAATATTATAAATCCTCAGTTAAAT
GATACTACTCCTTGGGGAGGGATAGTGTTAACGGGTTCTACTGCTACCAATAATAACAATGTAAATTTTGTGCCTAATAC
GGGGACTAACGCCTATATCGCAGATGCTTTATTAAGCCGTGGTGCAGGCGATACAGTAAGTACCTTAAATAACCAGTGGA
AAGGTCTTTCAAATATACAGAACAGTTCAAATGCAACTATACAGAGTGATCAGCTTACTATTCAATTTATTGCTCCTTCT
AATATGACAAATTGTGAAGGTGCAAATGTTTTGGCGGGTGATCTTGTTGTAGAGCGCTATTTTTTACGTCTCGATAATAA
TGGGAGTTCACAACAAGATTATGCACTAGCATGTGATGCAAATACACCTTCTAACACACCTACAGCTCAACCAACATCAG
TTGATGGGTTTGGAGATGCGGGTCAAATTATATTGCCACGTATTGATCATTTTCATGTTCTATTAGGCGCGAAAAATGCA
GCTGGTAATTTTGCTTATTACACTATTCCCCAATATCGAGTGGCTGCACAAGCTGCAAGAGATGCGACCCCTACACAATT
AGCTCCGCGTATCTTATCCATACAAATTTCTGTATTAGCACGTTCTACCAATAATGCTCAAAACAAAGCAGTCGATCTTA
ATCAAACTTTTGTAATGTTAGATCAAACAGTACATGCCTCAGATACAAGTACACGATTCTTACGACGCGTTTATAGCACA
ACAATTGCTTTACGTAATGCAATGGGGGAAAAACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(180-326)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

83.183

100

0.834
  comB Acinetobacter baylyi ADP1

34.682

100

0.361

Multiple sequence alignment