Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FDQ49_RS08365 Genome accession   NZ_CP040105
Coordinates   1785020..1786441 (+) Length   473 a.a.
NCBI ID   WP_022575140.1    Uniprot ID   A0A836MN91
Organism   Acinetobacter nosocomialis M2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780020..1791441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS08345 (FDQ49_08345) thrC 1780275..1781414 (+) 1140 WP_002048893.1 threonine synthase -
  FDQ49_RS08350 (FDQ49_08350) pbpG 1781523..1782569 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  FDQ49_RS08355 (FDQ49_08355) - 1782781..1783416 (+) 636 WP_000633799.1 response regulator -
  FDQ49_RS08360 (FDQ49_08360) pilS 1783427..1784995 (+) 1569 WP_022575141.1 PAS domain-containing sensor histidine kinase Regulator
  FDQ49_RS08365 (FDQ49_08365) pilR 1785020..1786441 (+) 1422 WP_022575140.1 sigma-54 dependent transcriptional regulator Regulator
  FDQ49_RS08370 (FDQ49_08370) - 1786445..1787629 (-) 1185 WP_022575139.1 S41 family peptidase -
  FDQ49_RS08375 (FDQ49_08375) gpmI 1787645..1789192 (-) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FDQ49_RS08380 (FDQ49_08380) lptG 1789318..1790388 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53144.41 Da        Isoelectric Point: 6.6690

>NTDB_id=362227 FDQ49_RS08365 WP_022575140.1 1785020..1786441(+) (pilR) [Acinetobacter nosocomialis M2]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALSRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIAMVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=362227 FDQ49_RS08365 WP_022575140.1 1785020..1786441(+) (pilR) [Acinetobacter nosocomialis M2]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACCAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTGAGTCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCTCGTTCT
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAAGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAGGTTAAATTGCTGCGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGTGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCTGCTCCTTTAAGAGCAAATATTTCTAATTCAATCGCAATGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACTCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MN91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.503

100

0.945
  pilR Pseudomonas aeruginosa PAK

50.433

97.674

0.493

Multiple sequence alignment