Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FDV79_RS15315 | Genome accession | NZ_CP040103 |
| Coordinates | 3207869..3208462 (-) | Length | 197 a.a. |
| NCBI ID | WP_140381237.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain LVP66 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3202869..3213462
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDV79_RS15295 (FDV79_16380) | aroB | 3203745..3204845 (-) | 1101 | WP_020839761.1 | 3-dehydroquinate synthase | - |
| FDV79_RS15300 (FDV79_16385) | aroK | 3204877..3205395 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FDV79_RS15305 (FDV79_16390) | pilQ | 3205584..3207332 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FDV79_RS15310 (FDV79_16395) | pilP | 3207364..3207879 (-) | 516 | WP_025525190.1 | pilus assembly protein PilP | Machinery gene |
| FDV79_RS15315 (FDV79_16400) | pilO | 3207869..3208462 (-) | 594 | WP_140381237.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FDV79_RS15320 (FDV79_16405) | pilN | 3208455..3209033 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| FDV79_RS15325 (FDV79_16410) | pilM | 3209017..3210033 (-) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FDV79_RS15330 (FDV79_16415) | - | 3210176..3212746 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23154.73 Da Isoelectric Point: 4.8225
>NTDB_id=362200 FDV79_RS15315 WP_140381237.1 3207869..3208462(-) (pilO) [Vibrio parahaemolyticus strain LVP66]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQYENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQYENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=362200 FDV79_RS15315 WP_140381237.1 3207869..3208462(-) (pilO) [Vibrio parahaemolyticus strain LVP66]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGTTTGAACACTTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATATGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGTTTGAACACTTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATATGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
72.081 |
100 |
0.721 |