Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FDV78_RS02375 | Genome accession | NZ_CP040101 |
| Coordinates | 498818..499396 (+) | Length | 192 a.a. |
| NCBI ID | WP_029837358.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain LVP2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 493818..504396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDV78_RS02360 (FDV78_02595) | oxyR | 494141..495049 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| FDV78_RS02365 (FDV78_02600) | - | 495105..497675 (-) | 2571 | WP_179000410.1 | penicillin-binding protein 1A | - |
| FDV78_RS02370 (FDV78_02605) | pilM | 497818..498834 (+) | 1017 | WP_021449761.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FDV78_RS02375 (FDV78_02610) | pilN | 498818..499396 (+) | 579 | WP_029837358.1 | PilN domain-containing protein | Machinery gene |
| FDV78_RS02380 (FDV78_02615) | pilO | 499389..499982 (+) | 594 | WP_179000411.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FDV78_RS02385 (FDV78_02620) | pilP | 499972..500487 (+) | 516 | WP_025794802.1 | pilus assembly protein PilP | Machinery gene |
| FDV78_RS02390 (FDV78_02625) | pilQ | 500519..502267 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FDV78_RS02395 (FDV78_02630) | aroK | 502456..502974 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FDV78_RS02400 (FDV78_02635) | aroB | 503006..504106 (+) | 1101 | WP_140173795.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22424.88 Da Isoelectric Point: 6.6554
>NTDB_id=362126 FDV78_RS02375 WP_029837358.1 498818..499396(+) (pilN) [Vibrio parahaemolyticus strain LVP2]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKNEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKNEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=362126 FDV78_RS02375 WP_029837358.1 498818..499396(+) (pilN) [Vibrio parahaemolyticus strain LVP2]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAACGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAACGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |