Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FDV78_RS02370 Genome accession   NZ_CP040101
Coordinates   497818..498834 (+) Length   338 a.a.
NCBI ID   WP_021449761.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492818..503834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS02355 (FDV78_02590) - 493242..493970 (-) 729 WP_015297397.1 redoxin family protein -
  FDV78_RS02360 (FDV78_02595) oxyR 494141..495049 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  FDV78_RS02365 (FDV78_02600) - 495105..497675 (-) 2571 WP_179000410.1 penicillin-binding protein 1A -
  FDV78_RS02370 (FDV78_02605) pilM 497818..498834 (+) 1017 WP_021449761.1 type IV pilus biogenesis protein PilM Machinery gene
  FDV78_RS02375 (FDV78_02610) pilN 498818..499396 (+) 579 WP_029837358.1 PilN domain-containing protein Machinery gene
  FDV78_RS02380 (FDV78_02615) pilO 499389..499982 (+) 594 WP_179000411.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDV78_RS02385 (FDV78_02620) pilP 499972..500487 (+) 516 WP_025794802.1 pilus assembly protein PilP Machinery gene
  FDV78_RS02390 (FDV78_02625) pilQ 500519..502267 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  FDV78_RS02395 (FDV78_02630) aroK 502456..502974 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37748.26 Da        Isoelectric Point: 6.8322

>NTDB_id=362125 FDV78_RS02370 WP_021449761.1 497818..498834(+) (pilM) [Vibrio parahaemolyticus strain LVP2]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPDKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=362125 FDV78_RS02370 WP_021449761.1 497818..498834(+) (pilM) [Vibrio parahaemolyticus strain LVP2]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTATTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTTGTACGCCTTCGTGCTGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGTCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGATAAAAACAAATACTG
TTTGTTAGACATCGGCTCGTTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTCTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACGTCGATCAACGGTTCGCAGAACATTAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTCTCGCATCAGTTGGCATTGGAGTGCGAGTTGCTAA
ACCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGACGAGCGGCTGATTGGCAACATTTTTCGACAGCTGCA
GGGCTGGCGGTCCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

49.263

100

0.494

Multiple sequence alignment