Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FBB35_RS02455 Genome accession   NZ_CP040094
Coordinates   545915..547468 (+) Length   517 a.a.
NCBI ID   WP_174708329.1    Uniprot ID   A0A6N0LKF7
Organism   Nostoc sp. TCL240-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540915..552468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBB35_RS02435 (FBB35_02415) - 542225..542743 (-) 519 WP_174708326.1 DUF456 domain-containing protein -
  FBB35_RS35335 - 542846..542974 (-) 129 WP_302480944.1 hypothetical protein -
  FBB35_RS02440 (FBB35_02420) - 543001..543915 (+) 915 WP_174708327.1 M48 family metallopeptidase -
  FBB35_RS02445 (FBB35_02425) - 544139..544774 (-) 636 WP_174708328.1 cofactor assembly of complex C subunit B -
  FBB35_RS02450 (FBB35_02430) rpaB 545016..545744 (-) 729 WP_012412029.1 response regulator transcription factor RpaB -
  FBB35_RS02455 (FBB35_02435) radA 545915..547468 (+) 1554 WP_174708329.1 DNA repair protein RadA Machinery gene
  FBB35_RS34230 (FBB35_02440) - 547588..547677 (+) 90 Protein_494 Uma2 family endonuclease -
  FBB35_RS02460 (FBB35_02445) - 548184..548744 (+) 561 Protein_495 Uma2 family endonuclease -
  FBB35_RS02465 (FBB35_02450) - 548754..549710 (-) 957 WP_174708330.1 IS630 family transposase -
  FBB35_RS02470 (FBB35_02455) - 549775..550026 (+) 252 Protein_497 Uma2 family endonuclease -
  FBB35_RS02475 (FBB35_02460) - 550611..551861 (+) 1251 WP_174708331.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 55461.48 Da        Isoelectric Point: 4.8228

>NTDB_id=362025 FBB35_RS02455 WP_174708329.1 545915..547468(+) (radA) [Nostoc sp. TCL240-02]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQSNGKSHSKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEGKLEVIVDPTLPIEVVDSTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVA
QVRECTAALMKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVTD
GLREVSNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSK
LDSYVASAGGLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKF
PDLNIEILPVSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=362025 FBB35_RS02455 WP_174708329.1 545915..547468(+) (radA) [Nostoc sp. TCL240-02]
ATGGCAAAGCCAAAAACCTTTTTCACTTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGTACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGTCGAGGGGGGGTAAGTAGTT
GGCAATCGGCTCAAAGCAATGGCAAATCTCACTCTAAACCAGCTAAAGCCCGTGCCTCTTTGACATTCGATCAAATTACC
GATCGCCAAATCGCTCGCTGGGAGTCTGGTTATGGAGAATTAGATCGAGTGCTTGGAGGTGGGGTTGTCCCTGGATCTAT
GGTGCTGATTGGTGGCGATCCAGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCTAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACTGGCGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAACCCCTA
AGTGTGGTTAATGAGGGGAAGCTTGAAGTAATCGTAGATCCGACACTACCCATAGAAGTAGTAGATTCTACACTACCCAT
AGACCCTGACAGTATAGGTGCAGATTTATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTC
TAAAACCAAATGTGGCGGTGATTGATAGTATCCAAACGGTGTTTTTTCCGGCGCTGACTTCTGCACCAGGTTCAGTGGCT
CAGGTACGGGAATGTACAGCAGCACTGATGAAGGTGGCAAAGCACGAAGATGTTACCATGCTGATTGTGGGACACGTGAC
TAAAGAAGGAGCGATCGCCGGGCCAAAAGTTTTAGAACATTTAGTAGATACGGTGTTGTATTTTGAAGGCGATCGCTTTG
CCTCCCATCGATTATTACGCACAGTCAAAAACCGCTTCGGCGCAACTCACGAAATCGGCATCTTTGAAATGGTGACAGAT
GGATTGCGAGAAGTCTCTAATCCCTCAGAGCTATTTTTAGGCAACCGTGACGATCCGGCTCCCGGTACTGCCATTGTGGT
TGCTTGCGAAGGTACTCGCCCCATCGTTGTAGAATTGCAAGCTTTAGTAAGTCCCACCAGTTACCCTTCCCCTCGACGTG
CTGGAACTGGCGTAGACTACAACCGCCTAGTACAAATTCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCCAAG
TTAGATTCTTACGTTGCTTCTGCGGGTGGGTTGAATGTGGAAGAACCGGCGGTAGATTTAGGAATAGCGATCGCAATTGT
AGCTAGTTTCCGCGATCGCATCGTCGATCCCGGTACAGTCTTAATCGGTGAAGTTGGGCTAGGTGGACAAGTGCGATCGG
TTTCCCAAATGGAACTGCGGTTGAAAGAAGCTGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCAAAAGGAACAAAATTC
CCCGACTTAAATATTGAGATATTACCAGTCTCTAAAGTAATAGATGCAATTATCGCCGCCATACCGCATCAAGAATTGAC
AGCCGACGATTTAGAACCAGACGAAGATGAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(90-305)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(411-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0LKF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.503

97.292

0.482
  radA Streptococcus mitis SK321

45

96.712

0.435
  radA Streptococcus pneumoniae Rx1

46.444

92.456

0.429
  radA Streptococcus pneumoniae D39

46.444

92.456

0.429
  radA Streptococcus pneumoniae R6

46.444

92.456

0.429
  radA Streptococcus pneumoniae TIGR4

46.444

92.456

0.429
  radA Streptococcus mitis NCTC 12261

46.444

92.456

0.429

Multiple sequence alignment