Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FDM99_RS11190 | Genome accession | NZ_CP040080 |
| Coordinates | 2296215..2296595 (+) | Length | 126 a.a. |
| NCBI ID | WP_032025535.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain SP304 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2291215..2301595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDM99_RS11160 (FDM99_11160) | kdsB | 2292118..2292879 (+) | 762 | WP_032025537.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FDM99_RS11165 (FDM99_11165) | - | 2292891..2293871 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| FDM99_RS11170 (FDM99_11170) | - | 2293883..2294224 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FDM99_RS11175 (FDM99_11175) | - | 2294242..2295015 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| FDM99_RS11180 (FDM99_11180) | - | 2295053..2295661 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FDM99_RS11185 (FDM99_11185) | - | 2295671..2296225 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FDM99_RS11190 (FDM99_11190) | xcpV | 2296215..2296595 (+) | 381 | WP_032025535.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FDM99_RS11195 (FDM99_11195) | xcpW | 2296595..2297296 (+) | 702 | WP_032025534.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FDM99_RS11200 (FDM99_11200) | gspK | 2297296..2298255 (+) | 960 | WP_032025533.1 | type II secretion system minor pseudopilin GspK | - |
| FDM99_RS11205 (FDM99_11205) | - | 2298485..2299081 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FDM99_RS11210 (FDM99_11210) | ung | 2299132..2299845 (+) | 714 | WP_029424376.1 | uracil-DNA glycosylase | - |
| FDM99_RS11215 (FDM99_11215) | - | 2299842..2300966 (+) | 1125 | WP_086377635.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FDM99_RS11220 (FDM99_11220) | tadA | 2300973..2301476 (+) | 504 | WP_032025531.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14028.31 Da Isoelectric Point: 9.8004
>NTDB_id=361931 FDM99_RS11190 WP_032025535.1 2296215..2296595(+) (xcpV) [Acinetobacter baumannii strain SP304]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKLAQSTISPNVQKIDLQVNLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKLAQSTISPNVQKIDLQVNLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=361931 FDM99_RS11190 WP_032025535.1 2296215..2296595(+) (xcpV) [Acinetobacter baumannii strain SP304]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTTAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAATTTATATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTTAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAATTTATATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |