Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FDM99_RS00655 Genome accession   NZ_CP040080
Coordinates   116830..117465 (+) Length   211 a.a.
NCBI ID   WP_137344707.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SP304     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111830..122465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDM99_RS00640 (FDM99_00640) adeT2 112890..113876 (-) 987 WP_137344704.1 putative multidrug efflux protein AdeT2 -
  FDM99_RS00645 (FDM99_00645) - 113956..114771 (-) 816 WP_137344705.1 NAD(P)H-binding protein -
  FDM99_RS00650 (FDM99_00650) recG 114792..116837 (+) 2046 WP_137344706.1 ATP-dependent DNA helicase RecG -
  FDM99_RS00655 (FDM99_00655) comF 116830..117465 (+) 636 WP_137344707.1 ComF family protein Machinery gene
  FDM99_RS00660 (FDM99_00660) - 117468..117869 (-) 402 WP_000849702.1 NUDIX hydrolase -
  FDM99_RS00665 (FDM99_00665) - 117884..118465 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  FDM99_RS00670 (FDM99_00670) - 118622..119635 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  FDM99_RS00675 (FDM99_00675) - 119705..119992 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  FDM99_RS00680 (FDM99_00680) - 120004..120645 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  FDM99_RS00685 (FDM99_00685) - 120672..121352 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FDM99_RS00690 (FDM99_00690) mlaE 121352..122128 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24574.70 Da        Isoelectric Point: 9.7140

>NTDB_id=361902 FDM99_RS00655 WP_137344707.1 116830..117465(+) (comF) [Acinetobacter baumannii strain SP304]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=361902 FDM99_RS00655 WP_137344707.1 116830..117465(+) (comF) [Acinetobacter baumannii strain SP304]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment