Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FAZ95_RS02460 Genome accession   NZ_CP040077
Coordinates   560117..561625 (-) Length   502 a.a.
NCBI ID   WP_137330992.1    Uniprot ID   A0A4V1EGW1
Organism   Trinickia violacea strain DHOD12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555117..566625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ95_RS02430 (FAZ95_02430) - 556066..556701 (-) 636 WP_137330987.1 LON peptidase substrate-binding domain-containing protein -
  FAZ95_RS02435 (FAZ95_02435) rapZ 556738..557631 (-) 894 WP_137330988.1 RNase adapter RapZ -
  FAZ95_RS02440 (FAZ95_02440) hprK 557716..558684 (-) 969 WP_137330989.1 HPr(Ser) kinase/phosphatase -
  FAZ95_RS02445 (FAZ95_02445) ptsN 558825..559337 (-) 513 WP_137334390.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FAZ95_RS02450 (FAZ95_02450) - 559349..559579 (-) 231 WP_137330990.1 hypothetical protein -
  FAZ95_RS02455 (FAZ95_02455) raiA 559576..559947 (-) 372 WP_137330991.1 ribosome-associated translation inhibitor RaiA -
  FAZ95_RS02460 (FAZ95_02460) rpoN/rpoN1 560117..561625 (-) 1509 WP_137330992.1 RNA polymerase factor sigma-54 Machinery gene
  FAZ95_RS02465 (FAZ95_02465) lptB 561817..562584 (-) 768 WP_137334391.1 LPS export ABC transporter ATP-binding protein -
  FAZ95_RS02470 (FAZ95_02470) lptA 562623..563303 (-) 681 WP_137330993.1 lipopolysaccharide transport periplasmic protein LptA -
  FAZ95_RS02475 (FAZ95_02475) lptC 563333..563929 (-) 597 WP_137330994.1 LPS export ABC transporter periplasmic protein LptC -
  FAZ95_RS02480 (FAZ95_02480) - 563935..564474 (-) 540 WP_137330995.1 HAD family hydrolase -
  FAZ95_RS02485 (FAZ95_02485) kdsD 564476..565459 (-) 984 WP_137330996.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55167.16 Da        Isoelectric Point: 4.9360

>NTDB_id=361886 FAZ95_RS02460 WP_137330992.1 560117..561625(-) (rpoN/rpoN1) [Trinickia violacea strain DHOD12]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESEDEWIASPLRVAADGSVIAQTPNASSPEPMP
GASNSSSPAENADGGEPQSVDEYNGLASDSGSDASQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLMAQLRVTQAS
QRDRALITFLIESLDDDGYLTASLDEVLADLPEELEVDLDELNAALALLHSFDPAGVGARTASECLKLQLHRLDASPTRT
LALEIVAHHLELLAARDFTRLRKQLKANDDDLRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVRRTAQGWQAELNPEVV
PRLRINHLYANILRNSRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFTHGEIAMRPLVLREIADTL
GLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=361886 FAZ95_RS02460 WP_137330992.1 560117..561625(-) (rpoN/rpoN1) [Trinickia violacea strain DHOD12]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTCGCGCTGACGCCACAACTGCAGCAGTCGATCCGGCTGCTGCA
GTTGTCTACGCTCGAACTGCAACAAGAAGTCGCGATGGCGGTCGCGCAAAATCCGCTGCTCGAAAGCGAAGACGAATGGA
TCGCGAGTCCGCTGCGCGTCGCGGCGGACGGGTCGGTGATTGCGCAAACGCCGAACGCGAGCAGTCCCGAGCCGATGCCC
GGCGCGTCGAATTCCTCGAGCCCTGCCGAAAATGCCGACGGCGGCGAACCGCAAAGCGTCGACGAATACAACGGTCTAGC
CTCGGACAGCGGCTCCGACGCGAGCCAATGGAATCTCGACGACTACGGCCGCTCCGGCAACGCGTCGGATGACGACGACT
TGCCGCCGCTGCAAATCCACGAATCGACGACCACGCTGCGCGACCACCTGATGGCGCAACTGCGCGTCACGCAAGCGAGC
CAACGTGACCGCGCGCTGATCACGTTCCTGATCGAATCGCTCGACGACGACGGTTACTTGACCGCCTCGCTCGATGAAGT
GCTCGCCGATTTGCCGGAAGAGCTCGAAGTCGATCTCGACGAATTGAACGCCGCCTTGGCACTGCTGCACAGCTTCGATC
CGGCCGGGGTCGGTGCACGCACGGCTTCCGAATGCCTGAAGCTGCAACTGCATCGCCTCGACGCATCTCCTACGCGCACG
CTCGCACTCGAAATCGTCGCCCATCATCTGGAACTGCTCGCGGCACGCGATTTCACGCGCCTGCGCAAACAACTGAAGGC
CAATGACGACGACCTGCGCGACGCCCACGCGCTGATCCGCTCGCTCGAACCCTTCCCCGGCGCCGCCTACGGCAAGGCCG
AGGCCGACTACGTCGTGCCGGACATCATGGTGAGAAGAACTGCACAAGGCTGGCAGGCCGAACTGAATCCCGAGGTGGTG
CCGCGGCTGCGCATCAATCACCTTTACGCGAATATTTTGCGCAACAGCCGGGGCGATCCCGGCAGTGGCTCGCTGCGTCA
ACAGCTGCAAGAAGCGCGTTGGCTGATCAAAAATATTCAACAACGATTCGAGACGATTCTCAGGGTCGCGCAAGCCATTG
TGGAGCGTCAAAAGAACTTTTTCACGCACGGCGAAATTGCGATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTG
GGGCTACACGAGTCAACGGTCTCGCGTGTGACAACCGGGAAGTACATGCTTACCCCGTTTGGGACGCTTGAATTTAAGTA
CTTCTTTGGATCTCACGTTTCGACCGATACGGGGGGCGCGGCCTCATCAACGGCCATTCGCGCACTCATCAAGCAACTGA
TAGGAGCTGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAAGGATTCGTGGTCGCA
CGCCGCACGGTTGCCAAGTACCGCGAAGCCCTCAAGATTCCCGCAGTGAATTTGCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-329)

Sigma-54, DNA binding domain (Sigma54_DBD)

(345-500)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1EGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

69.323

100

0.693

Multiple sequence alignment