Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FDF20_RS07890 | Genome accession | NZ_CP040050 |
| Coordinates | 1624375..1624755 (+) | Length | 126 a.a. |
| NCBI ID | WP_045544207.1 | Uniprot ID | A0A1Y1P0I7 |
| Organism | Acinetobacter baumannii strain VB16141 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1619375..1629755
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDF20_RS07860 (FDF20_07860) | kdsB | 1620278..1621039 (+) | 762 | WP_045544209.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FDF20_RS07865 (FDF20_07865) | - | 1621051..1622031 (+) | 981 | WP_045544208.1 | DNA polymerase III subunit delta' | - |
| FDF20_RS07870 (FDF20_07870) | - | 1622043..1622384 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FDF20_RS07875 (FDF20_07875) | - | 1622402..1623175 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| FDF20_RS07880 (FDF20_07880) | - | 1623213..1623821 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FDF20_RS07885 (FDF20_07885) | - | 1623831..1624385 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FDF20_RS07890 (FDF20_07890) | xcpV | 1624375..1624755 (+) | 381 | WP_045544207.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FDF20_RS07895 (FDF20_07895) | xcpW | 1624755..1625456 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FDF20_RS07900 (FDF20_07900) | gspK | 1625456..1626415 (+) | 960 | WP_045544206.1 | type II secretion system minor pseudopilin GspK | - |
| FDF20_RS07905 (FDF20_07905) | - | 1626645..1627241 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FDF20_RS07910 (FDF20_07910) | ung | 1627292..1628005 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| FDF20_RS07915 (FDF20_07915) | - | 1628002..1629126 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FDF20_RS07920 (FDF20_07920) | tadA | 1629133..1629636 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14035.30 Da Isoelectric Point: 9.8004
>NTDB_id=361805 FDF20_RS07890 WP_045544207.1 1624375..1624755(+) (xcpV) [Acinetobacter baumannii strain VB16141]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTFQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTFQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=361805 FDF20_RS07890 WP_045544207.1 1624375..1624755(+) (xcpV) [Acinetobacter baumannii strain VB16141]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTTCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTTCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |