Detailed information NTG0361806

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: FDF20_RS07895
• Genome accession: NZ_CP040050
• Coordinates: 1624755..1625456 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain VB16141
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1619755..1630456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDF20_RS07860 (FDF20_07860)	kdsB	1620278..1621039 (+)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FDF20_RS07865 (FDF20_07865)	-	1621051..1622031 (+)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
FDF20_RS07870 (FDF20_07870)	-	1622043..1622384 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
FDF20_RS07875 (FDF20_07875)	-	1622402..1623175 (+)	774	WP_000497298.1	TatD family hydrolase	-
FDF20_RS07880 (FDF20_07880)	-	1623213..1623821 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
FDF20_RS07885 (FDF20_07885)	-	1623831..1624385 (+)	555	WP_000841373.1	type II secretion system protein	-
FDF20_RS07890 (FDF20_07890)	xcpV	1624375..1624755 (+)	381	WP_045544207.1	type II secretion system minor pseudopilin GspI	Machinery gene
FDF20_RS07895 (FDF20_07895)	xcpW	1624755..1625456 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
FDF20_RS07900 (FDF20_07900)	gspK	1625456..1626415 (+)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
FDF20_RS07905 (FDF20_07905)	-	1626645..1627241 (+)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
FDF20_RS07910 (FDF20_07910)	ung	1627292..1628005 (+)	714	WP_001177530.1	uracil-DNA glycosylase	-
FDF20_RS07915 (FDF20_07915)	-	1628002..1629126 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
FDF20_RS07920 (FDF20_07920)	tadA	1629133..1629636 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
FDF20_RS07925 (FDF20_07925)	-	1629706..1630149 (+)	444	WP_045544205.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=361806 FDF20_RS07895 WP_000594572.1 1624755..1625456(+) (xcpW) [Acinetobacter baumannii strain VB16141]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=361806 FDF20_RS07895 WP_000594572.1 1624755..1625456(+) (xcpW) [Acinetobacter baumannii strain VB16141]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991