Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FCL38_RS25510 Genome accession   NZ_CP040017
Coordinates   6055900..6056970 (-) Length   356 a.a.
NCBI ID   WP_137316203.1    Uniprot ID   A0A4P8HWY3
Organism   Pseudoduganella umbonata strain DSMZ 26121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6050900..6061970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCL38_RS25490 (FCL38_25490) - 6052050..6052505 (-) 456 WP_229422351.1 hypothetical protein -
  FCL38_RS25495 (FCL38_25495) rpoH 6052932..6053825 (-) 894 WP_137317673.1 RNA polymerase sigma factor RpoH -
  FCL38_RS25500 (FCL38_25500) ftsX 6054313..6055227 (-) 915 WP_137316201.1 permease-like cell division protein FtsX -
  FCL38_RS25505 (FCL38_25505) - 6055224..6055883 (-) 660 WP_137316202.1 cell division ATP-binding protein FtsE -
  FCL38_RS25510 (FCL38_25510) pilA 6055900..6056970 (-) 1071 WP_137316203.1 signal recognition particle-docking protein FtsY Machinery gene
  FCL38_RS25515 (FCL38_25515) - 6057179..6058165 (-) 987 WP_229422352.1 MerR family transcriptional regulator -
  FCL38_RS25520 (FCL38_25520) - 6058347..6059264 (-) 918 WP_137316204.1 AEC family transporter -
  FCL38_RS25525 (FCL38_25525) - 6059306..6060280 (-) 975 WP_175424912.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37772.73 Da        Isoelectric Point: 6.0599

>NTDB_id=361646 FCL38_RS25510 WP_137316203.1 6055900..6056970(-) (pilA) [Pseudoduganella umbonata strain DSMZ 26121]
MFSFFKKKTVTPDVPPAAPADQAPAPAPAGLSPSPVPAAEAEAVPLVFDAETAPRPESKQSWMGRLKAGLSKTSANLSLL
FVGARIDDDLYDELEAALLMADAGIDATDYLLEALKRKVKDEKLTDAAAVKVALKALMIDLLRPLEKPFVLGRHQPTVMM
ISGVNGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMIWGQRNNVTVISQESGDPAAVSYDAVQSGKAKGTNV
VMIDTAGRLPTQLHLMNELQKIKRVIAKGMAEAPHETLLVIDGNTGQNALAQVKAFDDALQLTGLIITKLDGTAKGGVLA
AIARVRPVPVYFIGIGEKIEDLQPFDAEEFVEALLG

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=361646 FCL38_RS25510 WP_137316203.1 6055900..6056970(-) (pilA) [Pseudoduganella umbonata strain DSMZ 26121]
ATGTTCAGCTTCTTCAAGAAAAAAACCGTCACGCCCGACGTGCCGCCGGCCGCACCTGCGGACCAGGCACCTGCCCCGGC
TCCCGCTGGCCTTTCCCCGAGCCCCGTTCCGGCCGCCGAAGCCGAAGCGGTTCCGCTTGTTTTCGACGCCGAGACGGCGC
CACGCCCGGAATCGAAGCAATCCTGGATGGGCAGGCTCAAGGCCGGCCTGTCGAAAACCTCCGCCAACCTGTCGCTGCTG
TTCGTTGGCGCCCGTATCGACGACGACCTGTACGACGAGCTGGAAGCGGCGCTGCTGATGGCCGATGCCGGCATCGATGC
GACCGACTACCTGCTCGAGGCGCTCAAGCGCAAGGTCAAGGATGAAAAACTGACCGATGCGGCCGCCGTGAAGGTGGCGC
TGAAGGCCTTGATGATCGACCTGTTGCGCCCCCTGGAAAAGCCGTTCGTGCTGGGCCGGCACCAGCCGACGGTGATGATG
ATTTCCGGCGTCAACGGCGCCGGCAAGACCACCACGATCGGCAAGCTCGCCAAGCACATGCAGGCGCACGGCCAGTCCGT
GCTGCTGGCCGCCGGCGACACGTTCCGCGCCGCGGCCCGCGAACAGCTGATGATTTGGGGCCAGCGCAACAACGTGACCG
TGATCTCGCAGGAATCCGGCGACCCGGCCGCCGTGTCGTATGACGCGGTGCAGTCCGGCAAGGCGAAAGGCACCAATGTC
GTCATGATCGACACGGCCGGCCGCCTGCCCACCCAGTTGCACCTGATGAACGAGCTGCAGAAGATCAAGCGCGTGATCGC
CAAGGGCATGGCCGAGGCGCCGCACGAGACGCTGCTCGTCATCGACGGCAACACGGGCCAGAATGCGCTGGCCCAGGTCA
AGGCGTTCGACGATGCGCTGCAGCTGACCGGCCTCATCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCC
GCGATCGCGCGCGTGCGCCCGGTGCCCGTGTACTTCATCGGCATCGGCGAAAAGATCGAGGACCTGCAACCGTTCGACGC
CGAGGAATTCGTCGAAGCCCTGCTCGGTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-135)

SRP54-type protein, GTPase domain (SRP54)

(156-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8HWY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.232

96.91

0.545

Multiple sequence alignment