Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FCL38_RS23055 Genome accession   NZ_CP040017
Coordinates   5495688..5497163 (+) Length   491 a.a.
NCBI ID   WP_137315795.1    Uniprot ID   A0A4P8HSX8
Organism   Pseudoduganella umbonata strain DSMZ 26121     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5490688..5502163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCL38_RS23030 (FCL38_23030) - 5491707..5492729 (+) 1023 WP_137315791.1 SIS domain-containing protein -
  FCL38_RS23035 (FCL38_23035) - 5492729..5493268 (+) 540 WP_137315792.1 HAD family hydrolase -
  FCL38_RS23040 (FCL38_23040) lptC 5493372..5493962 (+) 591 WP_229422317.1 LPS export ABC transporter periplasmic protein LptC -
  FCL38_RS23045 (FCL38_23045) lptA 5494144..5494737 (+) 594 WP_137315793.1 lipopolysaccharide transport periplasmic protein LptA -
  FCL38_RS23050 (FCL38_23050) lptB 5494738..5495499 (+) 762 WP_137315794.1 LPS export ABC transporter ATP-binding protein -
  FCL38_RS23055 (FCL38_23055) rpoN/rpoN1 5495688..5497163 (+) 1476 WP_137315795.1 RNA polymerase factor sigma-54 Machinery gene
  FCL38_RS23060 (FCL38_23060) hpf 5497281..5497637 (+) 357 WP_137315796.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FCL38_RS23065 (FCL38_23065) - 5497794..5498876 (+) 1083 WP_137315797.1 enoyl-CoA hydratase/isomerase family protein -
  FCL38_RS23070 (FCL38_23070) - 5498887..5499894 (+) 1008 WP_137315798.1 amidohydrolase family protein -
  FCL38_RS23075 (FCL38_23075) rapZ 5500442..5501305 (-) 864 WP_137315799.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 54660.13 Da        Isoelectric Point: 4.9764

>NTDB_id=361642 FCL38_RS23055 WP_137315795.1 5495688..5497163(+) (rpoN/rpoN1) [Pseudoduganella umbonata strain DSMZ 26121]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSVRLLGDGAINTAQAPGEAPPEGG
PPQDAPAAPEPEPFDGGDGEGLDAGPGDTDWSSTGSGKGPDDDDARPQLEASHRSLREHLMEQMRVTVLESRDRALVELI
IDALDDNGYLEESLEEIHERLPEELEIEIDELRTALKLLQSFDPPGIGARNASECLALQIRRMPQVPLVTRRMALCIVEN
HLQWFAQRDFNKLKKALDCDDEDLREAQAVIRQCNPHPGAAFAADVSDYVVPDVVVRRGRNGWIVTLNNDVMPRLRVNAL
YASLLKQGKGETQMNAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVT
TQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQFTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREAL
KIPPVSLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=361642 FCL38_RS23055 WP_137315795.1 5495688..5497163(+) (rpoN/rpoN1) [Pseudoduganella umbonata strain DSMZ 26121]
ATGAAACAGTCTTTGCAACTGCGTACTTCCCAGCATCTCGCGCTGACGCCGCAACTGCAGCAGTCGATCCGGCTACTGCA
ACTGTCCACGCTGGAACTGCACCAGGAACTGGAACAGCTGCTGACCGATAACCCGCTGCTTGAACGGCTCGACGATCCGC
TCGACCGTTCCGTACGGCTGCTGGGTGACGGCGCGATCAACACCGCGCAGGCACCTGGCGAAGCGCCACCGGAAGGCGGG
CCGCCACAGGATGCGCCGGCGGCGCCGGAGCCCGAGCCGTTCGATGGCGGCGACGGCGAAGGCCTCGATGCCGGTCCCGG
CGATACCGACTGGAGCAGCACGGGCAGCGGCAAGGGGCCGGACGACGACGATGCCCGGCCACAGCTCGAGGCGAGTCACC
GCAGCCTGCGCGAGCACCTGATGGAGCAGATGCGCGTTACCGTGCTCGAGTCGCGCGACCGGGCACTGGTGGAGCTCATC
ATCGATGCGCTCGACGACAACGGCTACCTCGAGGAGAGCCTGGAAGAAATCCACGAGCGGCTGCCGGAAGAGCTGGAAAT
CGAGATCGACGAGCTGCGCACCGCGCTGAAGCTGCTGCAGAGTTTCGATCCGCCGGGGATCGGTGCGCGCAATGCTTCCG
AATGCCTGGCGCTGCAGATCCGGCGCATGCCGCAGGTGCCGCTTGTCACACGGCGCATGGCGCTGTGCATCGTTGAAAAC
CACCTGCAGTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAGAAAGCGCTCGATTGCGACGATGAGGATCTGCGCGAAGC
GCAGGCAGTGATCCGGCAATGCAACCCGCATCCGGGCGCCGCGTTCGCGGCCGACGTGTCAGACTACGTGGTACCGGATG
TGGTGGTGAGGCGTGGGCGCAATGGCTGGATCGTCACGCTGAACAACGATGTGATGCCCCGCCTGCGCGTCAATGCGCTC
TACGCCAGCCTGCTCAAGCAGGGCAAGGGTGAAACGCAGATGAATGCCCAGCTGCAGGAAGCCAAGTGGCTGATCAAGAA
TATGCGCCAGCGCTTCGACACGATCCTGCGCGTGGCCCAGGCCATCGTCGAGCGGCAGAAGAACTTTTTCTCGCATGGCG
CCGTGGCAATGAGACCCCTTGTGTTACGTGAAATAGCTGATACACTGGGCCTACACGAGAGTACTATCTCTCGGGTAACA
ACTCAAAAATATATGCTGACCCCGCATGGCATGTTTGAGTTGAAGTACTTTTTTGGCAGCCACGTCGCAACCGAAGCTGG
TGGGGAAGCTTCCTCGACTGCGATCCGGGCGCTGATCGTGCAATTCACAGGAGCCGAAGACCCTAAAAACCCTTTATCCG
ACAGTAAGATTGCGGACATGCTGGGTGAACAAGGCATGGTGATTGCGCGACGCACTGTTGCCAAATATCGCGAAGCATTG
AAAATCCCCCCGGTCAGCCTCCGTAAATCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-489)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-321)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8HSX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.396

100

0.621

Multiple sequence alignment