Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   E8N02_RS07770 Genome accession   NZ_CP040015
Coordinates   1531430..1532611 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526430..1537611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS07740 (E8N02_07805) - 1526975..1527316 (+) 342 WP_002869194.1 hypothetical protein -
  E8N02_RS07745 (E8N02_07810) flgM 1527379..1527576 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  E8N02_RS07750 (E8N02_07815) - 1527618..1528052 (+) 435 WP_002779263.1 flagellar protein FlgN -
  E8N02_RS07755 (E8N02_07820) flgK 1528062..1529888 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  E8N02_RS07760 (E8N02_07825) - 1529905..1530669 (+) 765 WP_002851318.1 TIGR02757 family protein -
  E8N02_RS07765 (E8N02_07830) - 1530673..1531437 (+) 765 WP_002855821.1 TSUP family transporter -
  E8N02_RS07770 (E8N02_07835) ctsF 1531430..1532611 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  E8N02_RS07775 (E8N02_07840) ctsE 1532608..1534167 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  E8N02_RS07780 (E8N02_07845) ctsX 1534157..1534744 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  E8N02_RS07785 (E8N02_07850) ctsP 1534748..1535356 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  E8N02_RS07790 (E8N02_07855) ctsD 1535349..1536761 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  E8N02_RS07795 (E8N02_07860) ctsR 1536739..1537050 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=361592 E8N02_RS07770 WP_002868229.1 1531430..1532611(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=361592 E8N02_RS07770 WP_002868229.1 1531430..1532611(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain LDG17f]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGTAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTCTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment