Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   E8N02_RS07795 Genome accession   NZ_CP040015
Coordinates   1536739..1537050 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1531739..1542050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS07775 (E8N02_07840) ctsE 1532608..1534167 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  E8N02_RS07780 (E8N02_07845) ctsX 1534157..1534744 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  E8N02_RS07785 (E8N02_07850) ctsP 1534748..1535356 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  E8N02_RS07790 (E8N02_07855) ctsD 1535349..1536761 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  E8N02_RS07795 (E8N02_07860) ctsR 1536739..1537050 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  E8N02_RS07800 (E8N02_07865) nifJ 1537074..1540634 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  E8N02_RS07805 (E8N02_07870) - 1540727..1541368 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=361597 E8N02_RS07795 WP_002855438.1 1536739..1537050(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=361597 E8N02_RS07795 WP_002855438.1 1536739..1537050(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain LDG17f]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment