Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3T04_RS13045 Genome accession   NZ_CP047782
Coordinates   2576512..2577624 (+) Length   370 a.a.
NCBI ID   WP_000775112.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2571512..2582624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T04_RS13020 (E3T04_13020) rnpA 2571775..2572128 (-) 354 WP_001789343.1 ribonuclease P protein component -
  E3T04_RS13025 (E3T04_13025) rpmH 2572249..2572386 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3T04_RS13030 (E3T04_13030) dnaA 2573117..2574478 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  E3T04_RS13035 (E3T04_13035) dnaN 2574756..2575889 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3T04_RS13040 (E3T04_13040) yaaA 2576270..2576515 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3T04_RS13045 (E3T04_13045) recF 2576512..2577624 (+) 1113 WP_000775112.1 DNA replication/repair protein RecF Machinery gene
  E3T04_RS13050 (E3T04_13050) gyrB 2577634..2579568 (+) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3T04_RS13055 (E3T04_13055) gyrA 2579605..2582265 (+) 2661 WP_000819094.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4359

>NTDB_id=361539 E3T04_RS13045 WP_000775112.1 2576512..2577624(+) (recF) [Staphylococcus aureus strain UP_1352]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=361539 E3T04_RS13045 WP_000775112.1 2576512..2577624(+) (recF) [Staphylococcus aureus strain UP_1352]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAACAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGACATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGACGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAACAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCACAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489