Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   E1E63_RS07960 Genome accession   NZ_CP039992
Coordinates   1618955..1619641 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Lr3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613955..1624641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1E63_RS07940 (E1E63_07940) rpsT 1614869..1615120 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E1E63_RS07945 (E1E63_07945) holA 1615165..1616139 (-) 975 WP_001282567.1 DNA polymerase III subunit delta -
  E1E63_RS07950 (E1E63_07950) comEC 1616196..1618397 (-) 2202 WP_001837660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E1E63_RS07955 (E1E63_07955) - 1618402..1618863 (-) 462 WP_000439693.1 ComE operon protein 2 -
  E1E63_RS07960 (E1E63_07960) comEA 1618955..1619641 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  E1E63_RS07965 (E1E63_07965) - 1619681..1620397 (-) 717 WP_111034687.1 class I SAM-dependent methyltransferase -
  E1E63_RS07970 (E1E63_07970) rsfS 1620400..1620753 (-) 354 WP_001088020.1 ribosome silencing factor -
  E1E63_RS07975 (E1E63_07975) yqeK 1620754..1621338 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E1E63_RS07980 (E1E63_07980) nadD 1621328..1621897 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E1E63_RS07985 (E1E63_07985) yhbY 1621900..1622190 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  E1E63_RS07990 (E1E63_07990) aroE 1622194..1623000 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  E1E63_RS07995 (E1E63_07995) yqeH 1623014..1624114 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=361484 E1E63_RS07960 WP_001788928.1 1618955..1619641(-) (comEA) [Staphylococcus aureus strain Lr3]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=361484 E1E63_RS07960 WP_001788928.1 1618955..1619641(-) (comEA) [Staphylococcus aureus strain Lr3]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment