Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BPOF4_RS13650 Genome accession   NC_013791
Coordinates   2679697..2679876 (-) Length   59 a.a.
NCBI ID   WP_041822935.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus OF4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 2674697..2684876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS13620 (BpOF4_02080) - 2675164..2676117 (+) 954 WP_238446466.1 LCP family protein -
  BPOF4_RS13625 (BpOF4_02085) fabF 2676195..2677430 (-) 1236 WP_012959762.1 beta-ketoacyl-ACP synthase II -
  BPOF4_RS13630 (BpOF4_02090) - 2677491..2678426 (-) 936 WP_012959763.1 beta-ketoacyl-ACP synthase III -
  BPOF4_RS13635 (BpOF4_02095) - 2678640..2678918 (+) 279 WP_012959764.1 hypothetical protein -
  BPOF4_RS13640 (BpOF4_02100) - 2678937..2679224 (-) 288 WP_012959765.1 hypothetical protein -
  BPOF4_RS13645 (BpOF4_02105) - 2679291..2679623 (-) 333 WP_012959766.1 hypothetical protein -
  BPOF4_RS13650 (BpOF4_02110) comZ 2679697..2679876 (-) 180 WP_041822935.1 ComZ family protein Regulator
  BPOF4_RS13655 (BpOF4_02115) - 2680011..2680967 (-) 957 WP_012959768.1 BMP family ABC transporter substrate-binding protein -
  BPOF4_RS13660 (BpOF4_02120) - 2681343..2682938 (+) 1596 WP_012959769.1 peptide chain release factor 3 -
  BPOF4_RS21240 (BpOF4_02125) - 2682975..2683724 (-) 750 WP_012959770.1 anti-sigma factor -
  BPOF4_RS13670 (BpOF4_02130) - 2683711..2684376 (-) 666 WP_012959771.1 cobalamin B12-binding domain-containing protein -
  BPOF4_RS13675 (BpOF4_02135) - 2684598..2684804 (-) 207 WP_012959772.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6774.89 Da        Isoelectric Point: 4.1947

>NTDB_id=36145 BPOF4_RS13650 WP_041822935.1 2679697..2679876(-) (comZ) [Alkalihalophilus pseudofirmus OF4]
MNMKFMQIAMNHLPEGKKFLDDKGIELNMDDLQPMLELLLNVMSEAYELGLEDGKSESK

Nucleotide


Download         Length: 180 bp        

>NTDB_id=36145 BPOF4_RS13650 WP_041822935.1 2679697..2679876(-) (comZ) [Alkalihalophilus pseudofirmus OF4]
ATGAATATGAAATTTATGCAAATTGCAATGAACCATTTACCGGAAGGGAAAAAATTTCTAGATGACAAAGGAATCGAATT
AAACATGGATGATTTGCAGCCCATGCTTGAACTATTGCTTAATGTCATGTCTGAAGCATACGAGCTTGGTCTAGAAGACG
GTAAATCTGAGAGTAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(1-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

51.724

98.305

0.508

Multiple sequence alignment