Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3T07_RS08890 Genome accession   NZ_CP047781
Coordinates   1723163..1723759 (-) Length   198 a.a.
NCBI ID   WP_000559172.1    Uniprot ID   Q6GJJ3
Organism   Staphylococcus aureus strain UP_1452     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1718163..1728759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T07_RS08885 (E3T07_08885) - 1722753..1722821 (-) 69 WP_370458382.1 hypothetical protein -
  E3T07_RS08890 (E3T07_08890) recR 1723163..1723759 (-) 597 WP_000559172.1 recombination mediator RecR Machinery gene
  E3T07_RS08895 (E3T07_08895) - 1723766..1724083 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  E3T07_RS08900 (E3T07_08900) dnaX 1724173..1725870 (-) 1698 WP_001109044.1 DNA polymerase III subunit gamma/tau -
  E3T07_RS08905 (E3T07_08905) - 1725939..1726463 (-) 525 WP_001167834.1 GNAT family N-acetyltransferase -
  E3T07_RS08910 (E3T07_08910) - 1726602..1726703 (-) 102 WP_001791573.1 hypothetical protein -
  E3T07_RS08920 (E3T07_08920) treR 1727104..1727832 (-) 729 WP_001118676.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22098.53 Da        Isoelectric Point: 4.8523

>NTDB_id=361433 E3T07_RS08890 WP_000559172.1 1723163..1723759(-) (recR) [Staphylococcus aureus strain UP_1452]
MHYPEPISKLINSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=361433 E3T07_RS08890 WP_000559172.1 1723163..1723759(-) (recR) [Staphylococcus aureus strain UP_1452]
ATGCATTATCCAGAACCTATATCAAAGCTTATTAATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCTGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GJJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

76.768

100

0.768
  recR Streptococcus pneumoniae R6

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475