Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EA667_RS01765 Genome accession   NZ_CP039930
Coordinates   359270..360088 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain TG29392     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354270..365088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA667_RS01730 (EA667_001730) - 354853..354982 (-) 130 Protein_323 hypothetical protein -
  EA667_RS01735 (EA667_001735) rpoZ 355021..355299 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EA667_RS01740 (EA667_001740) gmk 355372..356001 (-) 630 WP_000015937.1 guanylate kinase -
  EA667_RS01745 (EA667_001745) ispH 356124..357074 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EA667_RS01750 (EA667_001750) fimU 357244..357717 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EA667_RS01755 (EA667_001755) pilV 357711..358271 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EA667_RS01760 (EA667_001760) pilW 358272..359273 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  EA667_RS01765 (EA667_001765) pilX 359270..360088 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EA667_RS01770 (EA667_001770) pilY1 360100..363954 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  EA667_RS01775 (EA667_001775) pilY2 363967..364449 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  EA667_RS01780 (EA667_001780) pilE 364446..364871 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=361045 EA667_RS01765 WP_000149374.1 359270..360088(+) (pilX) [Acinetobacter baumannii strain TG29392]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=361045 EA667_RS01765 WP_000149374.1 359270..360088(+) (pilX) [Acinetobacter baumannii strain TG29392]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment