Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FCN25_RS07580 Genome accession   NZ_CP039928
Coordinates   1725112..1726635 (+) Length   507 a.a.
NCBI ID   WP_137223458.1    Uniprot ID   -
Organism   Shewanella sp. MEBiC00475     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720112..1731635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN25_RS07565 ilvC 1720853..1722334 (-) 1482 WP_137223452.1 ketol-acid reductoisomerase -
  FCN25_RS07570 ilvY 1722532..1723404 (+) 873 WP_137223454.1 HTH-type transcriptional activator IlvY -
  FCN25_RS07575 - 1723437..1724744 (-) 1308 WP_137223456.1 hemolysin family protein -
  FCN25_RS07580 comM 1725112..1726635 (+) 1524 WP_137223458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FCN25_RS07585 - 1726714..1727610 (+) 897 WP_137223460.1 acyltransferase -
  FCN25_RS07590 - 1727617..1728528 (+) 912 WP_137223462.1 acyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55441.63 Da        Isoelectric Point: 7.8158

>NTDB_id=361006 FCN25_RS07580 WP_137223458.1 1725112..1726635(+) (comM) [Shewanella sp. MEBiC00475]
MAIACVFTRASCGVEAPRVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSALINAGFEFPQKRITVNLAPADLPKQGGR
YDLPIAVGILAASNQVPAKALHQCEFVGELALSGQIRPCSGLLPAIIAARNDQHHFFMPIENRHEAELVGYHHSYFVAHL
QNLAAFLHGQAQLPLLDTLPEWIEEEPQSHSSLCMSDVIGQYQAKQGLEIAAAGGHNMLFVGPPGTGKSMLANRIIPLLP
KLTYDEAIEVAAIHSVAGLHVKPQNFLNRPFRSPHHTSSSIALIGGGSHPKPGEISLAHRGILFLDEIAEFPRKVLDCLR
EPLETGQVEISRAAAKLTFLSRFQLIAAMNPSPCGDTERARSTPDQIQRYLSRLSGPFLDRFDLTVDVPKLPAGTLTQQH
QPGETSIEIAKRVKQARDQQLSRSGVLNSELSPKQLKQDGAITLPDLEFLEQSVVSLGLSVRSFHRIQRVSRTIADLQQS
PTIERGHIAQALGYRAMDRLLAKLNQQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=361006 FCN25_RS07580 WP_137223458.1 1725112..1726635(+) (comM) [Shewanella sp. MEBiC00475]
ATGGCGATAGCCTGTGTATTTACTCGAGCAAGCTGCGGTGTAGAAGCGCCAAGAGTTACTGTTGAAGTGCATTTAAGCAA
CGGTTTACCCGCATTTAATCTAGTGGGATTGCCAGAAACCTCTGTCAAAGAAGCTAAAGAACGCGTTAGAAGTGCGTTAA
TTAATGCTGGCTTTGAATTCCCACAAAAACGCATTACCGTCAATTTAGCCCCAGCAGATTTGCCCAAGCAAGGCGGACGA
TATGATTTACCTATCGCAGTAGGTATTCTCGCAGCATCAAATCAAGTTCCAGCTAAAGCATTACATCAATGTGAGTTTGT
CGGTGAACTGGCACTCTCCGGCCAAATACGCCCTTGCAGTGGATTATTACCAGCCATTATTGCGGCACGTAATGATCAAC
ACCATTTTTTTATGCCCATCGAAAACCGCCATGAAGCTGAGCTGGTTGGCTATCATCACAGTTATTTTGTCGCCCACTTG
CAGAACTTAGCGGCTTTTCTACACGGCCAAGCACAATTACCTCTGCTTGATACCTTACCTGAATGGATAGAAGAAGAGCC
CCAAAGCCATTCATCGCTTTGTATGAGCGATGTCATCGGCCAGTATCAAGCCAAGCAAGGACTTGAAATTGCGGCGGCAG
GAGGACACAACATGTTGTTCGTAGGACCTCCAGGAACGGGGAAAAGCATGCTAGCCAATAGAATCATTCCACTATTACCA
AAACTCACTTACGATGAAGCCATTGAAGTAGCAGCTATTCATTCTGTCGCTGGATTACATGTAAAACCGCAAAATTTTCT
TAATCGCCCTTTTCGCTCGCCACATCATACATCATCATCTATTGCACTGATTGGTGGTGGAAGTCATCCAAAGCCAGGTG
AGATATCATTAGCGCACCGTGGGATATTATTTCTTGATGAAATAGCCGAGTTTCCGCGTAAAGTATTGGATTGTCTGCGT
GAACCTTTAGAAACCGGCCAAGTTGAGATTTCACGTGCTGCAGCAAAATTGACTTTTTTGAGTCGATTTCAACTTATTGC
CGCAATGAACCCAAGCCCTTGTGGCGATACAGAGCGCGCGCGTTCAACTCCTGATCAAATTCAACGTTATTTATCCCGTT
TATCAGGGCCATTTTTAGACCGCTTTGATTTAACCGTGGATGTACCCAAACTTCCTGCTGGCACCTTAACCCAACAGCAT
CAACCCGGTGAGACCAGTATTGAAATAGCCAAGCGGGTCAAACAAGCACGCGATCAACAACTCAGCCGATCTGGGGTGTT
AAATAGTGAATTATCCCCAAAACAACTCAAACAAGATGGTGCTATTACTCTACCCGATCTTGAATTTTTAGAGCAAAGCG
TTGTGAGTTTAGGCTTGTCTGTACGCAGTTTTCACCGTATTCAACGGGTATCACGCACCATTGCCGACTTGCAGCAATCG
CCTACCATCGAACGAGGTCACATTGCTCAAGCCCTTGGTTATCGGGCAATGGATCGATTACTGGCAAAACTGAATCAGCA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.01

100

0.552
  comM Haemophilus influenzae Rd KW20

54.832

100

0.548
  comM Vibrio cholerae strain A1552

54.224

100

0.544
  comM Glaesserella parasuis strain SC1401

54.043

100

0.54
  comM Legionella pneumophila str. Paris

46.2

98.619

0.456
  comM Legionella pneumophila strain ERS1305867

46.2

98.619

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.3

100

0.428

Multiple sequence alignment