Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FAH66_RS09370 Genome accession   NZ_CP039887
Coordinates   1912930..1914462 (+) Length   510 a.a.
NCBI ID   WP_167480335.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907930..1919462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS09345 (FAH66_09345) - 1908108..1908677 (+) 570 WP_036473516.1 L-threonylcarbamoyladenylate synthase -
  FAH66_RS09355 (FAH66_09355) - 1909063..1909503 (-) 441 WP_137041397.1 surface-adhesin E family protein -
  FAH66_RS09360 (FAH66_09360) purB 1909714..1911084 (+) 1371 WP_070749732.1 adenylosuccinate lyase -
  FAH66_RS09365 (FAH66_09365) msrAB 1911216..1912784 (-) 1569 WP_137041398.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  FAH66_RS09370 (FAH66_09370) pilA 1912930..1914462 (+) 1533 WP_167480335.1 signal recognition particle-docking protein FtsY Machinery gene
  FAH66_RS09375 (FAH66_09375) - 1914636..1915862 (-) 1227 WP_137041399.1 MFS transporter -
  FAH66_RS09380 (FAH66_09380) - 1915978..1916376 (-) 399 WP_137041400.1 extensin -
  FAH66_RS09385 (FAH66_09385) - 1916691..1918736 (-) 2046 WP_137041401.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54597.51 Da        Isoelectric Point: 4.2178

>NTDB_id=360957 FAH66_RS09370 WP_167480335.1 1912930..1914462(+) (pilA) [Neisseria subflava strain ATCC 49275]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHVESVVESAVETASETVEQVREALTETP
SETVEKIEEHVEAAKEAAVETVSETVEQVQETVAEMPSELAEAAEEAAEQAEAVKEAAVETVSEAVAQVQETVAEMPSEI
AEADEEAAEQAEAVKEAAVEAVSEAVEQVQEAVAETPAEASAPVEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=360957 FAH66_RS09370 WP_167480335.1 1912930..1914462(+) (pilA) [Neisseria subflava strain ATCC 49275]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATG
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGCCAGTGAAACCGTCGAACAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAGTCGAAAAAATAGAAGAACACGTTGAAGCGGCAAAAGAAGCGGCTGTTGAAACCGTTAGCGAGACTGTTGA
ACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAATTAGCCGAGGCTGCTGAGGAAGCAGCAGAACAGGCCGAAGCAG
TAAAAGAAGCGGCCGTTGAAACCGTCAGTGAGGCTGTTGCACAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAATA
GCCGAGGCTGATGAGGAAGCAGCAGAACAGGCCGAAGCGGTCAAAGAAGCAGCTGTTGAGGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCGTTGCGGAAACACCGGCTGAAGCCTCTGCTCCGGTAGAAGAACACAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGCGACAAAATGGCAAAATCGTTGGCCGGCGTGTTTGGCGGCGGACAGATCGAC
GAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
TGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGACGGCAACGAATTGCGCGGTGCGCTGAAAGATGCGCTGTACGACT
TGATTAAGCCTCTGGAGAAGCCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGC
GCAGGCAAAACCACATCTATCGGCAAATTGGCCAAATACTTCCAAGCACAGGGCAAATCCGTGTTGTTGGCGGCAGGCGA
TACCTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGCGAACGCAACAATGTGACCGTGATTTCGCAAACTACGG
GCGATTCCGCAGCCGTTTGCTTCGATGCCGTCCAAGCCGCGAAAGCGCGCGGGATCGACATCGTGCTTGCCGATACAGCC
GGCCGTCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATCGGGCAAAACGCCGTCAACCAAGTGAAAGCCTTTGACGAAGCGC
TGGGTCTGACCGGCCTGATCGTGACCAAGCTAGACGGTACGGCCAAAGGCGGTATCCTTGCCGCACTTGCTTCCGACCGC
CCAGTTCCTGTCCGCTACATCGGCGTAGGCGAAGGCATCGACGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTAGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

74.51

100

0.745

Multiple sequence alignment